| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is 117920631
Identifier: 117920631
GI number: 117920631
Start: 2626142
End: 2629153
Strand: Reverse
Name: 117920631
Synonym: Shewana3_2188
Alternate gene names: NA
Gene position: 2629153-2626142 (Counterclockwise)
Preceding gene: 117920632
Following gene: 117920630
Centisome position: 52.88
GC content: 42.07
Gene sequence:
>3012_bases GTGCATAACTTGGATAATACCTTCGAGCTGGGCTTTTCCAGCGAATATCAAATCCACGAGCTCATTTTTATTAACAGTGG GTCGAACTATTATGTTCGATTGCCAGTTGACCATCATGCTGCGCTAATATCTGACAACAACAGCGGTAAGACGTCCTCTC TTTCAGCCTTAAAGTTATTCTTACTTCCGGAAACCTCTTTCAAAAAGCAAAAAGACAAATTTGGATTCCAGTCGGGAGGA ACGTTTTATCAGGATCTATCGTCATATACTTATTACTTTCCTGGGTCTGAGTCTTACATCATATGCAGCGCCTCCAATCC CAGAGGCAGATTTTGTTGGATTCTTCACAGGACCACTGATCTTGGTTATGAGCGAATCGCCGTTCCAGAGGAATATAATT CAATCGAACACCTGTTCTGGAATGCAGATTCCGAATTAAACGAATCAGCCGGCACCCTGCACTCAGGCATAGGAATAGCT GCTATAAAGAAGCAGTTGGTTTCAAACTTCAAAGCAAAAGTGTTTAACGACCGTAAAACTATTGGTGACGCAATATACAG CAGAGCAACTAATCAGGACGACGACACTCGTTTCTGCCTGCTGCCGATGGCAAAAGGCTTTACTACAAGTGGAACTGAAA CCATTCGTTCTTTATTGGGAATGGCATTTAGCCTGGGTAATGCCTCTACAACATCCCTGCCTAAGGCTATAAGCTCAATT CTTGACGGCTTAGGAATGAGTGCAGTGAAGAAAAATAATGGTGAAGGTATCTTACTGGATTTGGATAGTCAGCTTCATGA ATGGCAAACACTGAAAACAGAAGATGCGAGACTTATACTCGTTGAGTCGCAAAAAGGCACTTTCGATACACTTCAGTCAG CACGAACAAAATATTATCAGCTACGCGGCAGCCTCCTAGATTCATTTAACAAAACTGTATGGTCGATAGAGTTAAGCAAA ACCGCTTTGACATCTAAACAAGAGACGCTTAAAAAGTCTGTTTCTGATTTACACGCGGAATTACAGGCATTTAAACCAGA ACATGATCGTCTGAGGAGCATGGAATCTGAGGCTAAAAGCGATCATAAATCTGCAGTCAACAGGCTTCACGAAATCGACA CCGCTATAAAGATTGTTGAAGAGTGTCGTAGTAAGCTTCTACCTCTTTGCCCTGCAGATTCGCGAAATGATCAATCGCTT TTAGCGGTGCTTGATGAACAGATCAAAGACTGTGAAACTGAAATCGCCAGCTTGCTAGACCAAGCCGCAGCTATTGAGAG AATGAAAAATTTCACATCTGTGATAAACCGCAACAAGGAGGAGCTCGAGTTACGTCGGAAGGCACTTGAAAATATAGACT CTAAATTATCCTTTCTCGATACCATCACCCCAGACGCGGCATCGATTCTACTGAGTATTAATAACAATTTTGCTAAGTTG GAAATAACACCCAGCGCTGAACAAAAAACCGTTATTCAATCTTTTGCAGCACTATTTGCTTCTGAAGCTGAAGCAGTCTA TTTCTGTGGCGCCATACTGCCTGGCGTTAACTTGAAGCGATTCAATAATGCAGATATCAAACGAGAATTGGAAAGTGTTA TCGATGTTCTGATAGCTAAGATTGAGCATGATGAAAAGCAACGAGCGACCATCAGTCAAAACTGTAGGTTGTCAAAAGAA CGCCAGGCTGAAAAGCTAAAAGAATGCACTGAAGATTTAGAGGAGCTGCGTCTGCAGAAACAAAATCTACAAGGCACTGA GCTACTAAATACTCAAAAGACAAAAGCTGAATCAGACGTTATTAGGTCGAAAGAAGAATTTGATAAAGCGACTCGCGAGT TTAAATCGGCTAGTGAAAAATTCGAAAATCTAAGCCGGCGATACAACTTGGCAAATGAAGAACTTACATCGGTGGGAAAC CCGCTCAGAGAGCTCAATAATCAAATTAGTCGTCTGGAGGATTTAGAGAGCAATTCCGGCCGAATACTTAATCTGGAGCA AGCAAAGCTCGAGACTCGTCATTCAGAGGTCATCAGCCAACCTATAAATCAGATAGCGGTGTCAGTTCAGTCATTGAAGA CCCAGTTATCTTTGGTCGGGGAAGTTCGGCAAGAGTGTATTGATACGATGAATTTTCTTCTTCAGTATCAAATTATCCCG GCTACACCAGAGGAGCGACACCAAATAACCACCAACTCTCAGTTTTTTGAAGACATGTATGGAGCGCTCCAAACTGTATT TCTGAACCTTGACCAGGCAAAAGTTAAGTACAGGGAAACGTTATCTCACCACAACAATACTGCTGCCGCTGCAGCTCGCA TTATTGAGAATGTAGAAGGCATTATTACCAACTTCATCAGCAACATTAACGATGAGATAAAAGGCTACAAAATATCAAAT CTGTCTTCCGTTATGCTCGTTCCTGAACTTCACGCTCAATACGTTGATATGACTCGCACACTCAATCGTATAGGCAACAG AATAGATGAGCTACTGTCAGAGTCGTTCTATGTCCAAATTAGCAACTTCCAAAATAATTTTTATAACAAACAGACCGGCA AGGTTGAAATCGACAAAATCATTGAAAAAGTGCGGTACCAATTTGTACGTAACGACACTGTAGAGGACACGCCGCAGTCA AATGGGACAAACTGCATGATAAACAGTGTGCTACTCGCACTGTTGTTACAGCGACTGGTTCCAGACGATTTGAGTTTAAG CATGCCTGTTGTGTTTGATGAGATTGGTAGTCTTGATGAGAAAAATTTTCAGGAGATCCTGAAGGTTATGGAAGAACATA ATCTCTATCTTTTTGTGGCAAACCCTGAGCAAAATGGCCTAATCGCCAGCGTCCTCGATACCTATCACGACCTTTCTCTT TTCAAAGCCTCTGATGTAGGCGTACTAAATAAAGCTGAAGCCATTTATTACCCTGGCATGGAGGAGCGGCTGGAAAATAT GGAATTTGAGTCTGAATTAGAAAACGTAGATGAAGCCATGATGAGTGCCTGA
Upstream 100 bases:
>100_bases CTGGAAAGCTTGGCTCATGTTTATGGGATATCGACAAAAACCGACAGGATCATATCGGCTATTCGCTATTACAAAACAAC TCTTGAACAGGAAAGCTACC
Downstream 100 bases:
>100_bases TAATGGATACGAACGCACAAAATACACTTGTCATTATCTTCCAGCATGTCGAGATCTTTTTCACGATGCTGGACCATTAC ACAGGCAGCAGTAAAACGGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 1003; Mature: 1003
Protein sequence:
>1003_residues MHNLDNTFELGFSSEYQIHELIFINSGSNYYVRLPVDHHAALISDNNSGKTSSLSALKLFLLPETSFKKQKDKFGFQSGG TFYQDLSSYTYYFPGSESYIICSASNPRGRFCWILHRTTDLGYERIAVPEEYNSIEHLFWNADSELNESAGTLHSGIGIA AIKKQLVSNFKAKVFNDRKTIGDAIYSRATNQDDDTRFCLLPMAKGFTTSGTETIRSLLGMAFSLGNASTTSLPKAISSI LDGLGMSAVKKNNGEGILLDLDSQLHEWQTLKTEDARLILVESQKGTFDTLQSARTKYYQLRGSLLDSFNKTVWSIELSK TALTSKQETLKKSVSDLHAELQAFKPEHDRLRSMESEAKSDHKSAVNRLHEIDTAIKIVEECRSKLLPLCPADSRNDQSL LAVLDEQIKDCETEIASLLDQAAAIERMKNFTSVINRNKEELELRRKALENIDSKLSFLDTITPDAASILLSINNNFAKL EITPSAEQKTVIQSFAALFASEAEAVYFCGAILPGVNLKRFNNADIKRELESVIDVLIAKIEHDEKQRATISQNCRLSKE RQAEKLKECTEDLEELRLQKQNLQGTELLNTQKTKAESDVIRSKEEFDKATREFKSASEKFENLSRRYNLANEELTSVGN PLRELNNQISRLEDLESNSGRILNLEQAKLETRHSEVISQPINQIAVSVQSLKTQLSLVGEVRQECIDTMNFLLQYQIIP ATPEERHQITTNSQFFEDMYGALQTVFLNLDQAKVKYRETLSHHNNTAAAAARIIENVEGIITNFISNINDEIKGYKISN LSSVMLVPELHAQYVDMTRTLNRIGNRIDELLSESFYVQISNFQNNFYNKQTGKVEIDKIIEKVRYQFVRNDTVEDTPQS NGTNCMINSVLLALLLQRLVPDDLSLSMPVVFDEIGSLDEKNFQEILKVMEEHNLYLFVANPEQNGLIASVLDTYHDLSL FKASDVGVLNKAEAIYYPGMEERLENMEFESELENVDEAMMSA
Sequences:
>Translated_1003_residues MHNLDNTFELGFSSEYQIHELIFINSGSNYYVRLPVDHHAALISDNNSGKTSSLSALKLFLLPETSFKKQKDKFGFQSGG TFYQDLSSYTYYFPGSESYIICSASNPRGRFCWILHRTTDLGYERIAVPEEYNSIEHLFWNADSELNESAGTLHSGIGIA AIKKQLVSNFKAKVFNDRKTIGDAIYSRATNQDDDTRFCLLPMAKGFTTSGTETIRSLLGMAFSLGNASTTSLPKAISSI LDGLGMSAVKKNNGEGILLDLDSQLHEWQTLKTEDARLILVESQKGTFDTLQSARTKYYQLRGSLLDSFNKTVWSIELSK TALTSKQETLKKSVSDLHAELQAFKPEHDRLRSMESEAKSDHKSAVNRLHEIDTAIKIVEECRSKLLPLCPADSRNDQSL LAVLDEQIKDCETEIASLLDQAAAIERMKNFTSVINRNKEELELRRKALENIDSKLSFLDTITPDAASILLSINNNFAKL EITPSAEQKTVIQSFAALFASEAEAVYFCGAILPGVNLKRFNNADIKRELESVIDVLIAKIEHDEKQRATISQNCRLSKE RQAEKLKECTEDLEELRLQKQNLQGTELLNTQKTKAESDVIRSKEEFDKATREFKSASEKFENLSRRYNLANEELTSVGN PLRELNNQISRLEDLESNSGRILNLEQAKLETRHSEVISQPINQIAVSVQSLKTQLSLVGEVRQECIDTMNFLLQYQIIP ATPEERHQITTNSQFFEDMYGALQTVFLNLDQAKVKYRETLSHHNNTAAAAARIIENVEGIITNFISNINDEIKGYKISN LSSVMLVPELHAQYVDMTRTLNRIGNRIDELLSESFYVQISNFQNNFYNKQTGKVEIDKIIEKVRYQFVRNDTVEDTPQS NGTNCMINSVLLALLLQRLVPDDLSLSMPVVFDEIGSLDEKNFQEILKVMEEHNLYLFVANPEQNGLIASVLDTYHDLSL FKASDVGVLNKAEAIYYPGMEERLENMEFESELENVDEAMMSA >Mature_1003_residues MHNLDNTFELGFSSEYQIHELIFINSGSNYYVRLPVDHHAALISDNNSGKTSSLSALKLFLLPETSFKKQKDKFGFQSGG TFYQDLSSYTYYFPGSESYIICSASNPRGRFCWILHRTTDLGYERIAVPEEYNSIEHLFWNADSELNESAGTLHSGIGIA AIKKQLVSNFKAKVFNDRKTIGDAIYSRATNQDDDTRFCLLPMAKGFTTSGTETIRSLLGMAFSLGNASTTSLPKAISSI LDGLGMSAVKKNNGEGILLDLDSQLHEWQTLKTEDARLILVESQKGTFDTLQSARTKYYQLRGSLLDSFNKTVWSIELSK TALTSKQETLKKSVSDLHAELQAFKPEHDRLRSMESEAKSDHKSAVNRLHEIDTAIKIVEECRSKLLPLCPADSRNDQSL LAVLDEQIKDCETEIASLLDQAAAIERMKNFTSVINRNKEELELRRKALENIDSKLSFLDTITPDAASILLSINNNFAKL EITPSAEQKTVIQSFAALFASEAEAVYFCGAILPGVNLKRFNNADIKRELESVIDVLIAKIEHDEKQRATISQNCRLSKE RQAEKLKECTEDLEELRLQKQNLQGTELLNTQKTKAESDVIRSKEEFDKATREFKSASEKFENLSRRYNLANEELTSVGN PLRELNNQISRLEDLESNSGRILNLEQAKLETRHSEVISQPINQIAVSVQSLKTQLSLVGEVRQECIDTMNFLLQYQIIP ATPEERHQITTNSQFFEDMYGALQTVFLNLDQAKVKYRETLSHHNNTAAAAARIIENVEGIITNFISNINDEIKGYKISN LSSVMLVPELHAQYVDMTRTLNRIGNRIDELLSESFYVQISNFQNNFYNKQTGKVEIDKIIEKVRYQFVRNDTVEDTPQS NGTNCMINSVLLALLLQRLVPDDLSLSMPVVFDEIGSLDEKNFQEILKVMEEHNLYLFVANPEQNGLIASVLDTYHDLSL FKASDVGVLNKAEAIYYPGMEERLENMEFESELENVDEAMMSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 113346; Mature: 113346
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHNLDNTFELGFSSEYQIHELIFINSGSNYYVRLPVDHHAALISDNNSGKTSSLSALKLF CCCCCCCEECCCCCCCEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCHHHHEEEE LLPETSFKKQKDKFGFQSGGTFYQDLSSYTYYFPGSESYIICSASNPRGRFCWILHRTTD EECCCHHHHHHHHCCCCCCCHHHHHHCCCEEECCCCCCEEEEECCCCCCCEEEEEEECCC LGYERIAVPEEYNSIEHLFWNADSELNESAGTLHSGIGIAAIKKQLVSNFKAKVFNDRKT CCCCEECCCHHHCCHHHHHCCCCCCCCHHHCHHHCCCHHHHHHHHHHHHHHHHHHCCHHH IGDAIYSRATNQDDDTRFCLLPMAKGFTTSGTETIRSLLGMAFSLGNASTTSLPKAISSI HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LDGLGMSAVKKNNGEGILLDLDSQLHEWQTLKTEDARLILVESQKGTFDTLQSARTKYYQ HHHCCHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH LRGSLLDSFNKTVWSIELSKTALTSKQETLKKSVSDLHAELQAFKPEHDRLRSMESEAKS HHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH DHKSAVNRLHEIDTAIKIVEECRSKLLPLCPADSRNDQSLLAVLDEQIKDCETEIASLLD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QAAAIERMKNFTSVINRNKEELELRRKALENIDSKLSFLDTITPDAASILLSINNNFAKL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCEEEE EITPSAEQKTVIQSFAALFASEAEAVYFCGAILPGVNLKRFNNADIKRELESVIDVLIAK EECCCHHHHHHHHHHHHHHHCCCCHHEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH IEHDEKQRATISQNCRLSKERQAEKLKECTEDLEELRLQKQNLQGTELLNTQKTKAESDV HCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHH IRSKEEFDKATREFKSASEKFENLSRRYNLANEELTSVGNPLRELNNQISRLEDLESNSG HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCC RILNLEQAKLETRHSEVISQPINQIAVSVQSLKTQLSLVGEVRQECIDTMNFLLQYQIIP CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC ATPEERHQITTNSQFFEDMYGALQTVFLNLDQAKVKYRETLSHHNNTAAAAARIIENVEG CCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IITNFISNINDEIKGYKISNLSSVMLVPELHAQYVDMTRTLNRIGNRIDELLSESFYVQI HHHHHHHHCCHHHCCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE SNFQNNFYNKQTGKVEIDKIIEKVRYQFVRNDTVEDTPQSNGTNCMINSVLLALLLQRLV ECHHCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC PDDLSLSMPVVFDEIGSLDEKNFQEILKVMEEHNLYLFVANPEQNGLIASVLDTYHDLSL CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHH FKASDVGVLNKAEAIYYPGMEERLENMEFESELENVDEAMMSA EECCCCCCCCCCCEEECCCHHHHHHCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MHNLDNTFELGFSSEYQIHELIFINSGSNYYVRLPVDHHAALISDNNSGKTSSLSALKLF CCCCCCCEECCCCCCCEEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCHHHHEEEE LLPETSFKKQKDKFGFQSGGTFYQDLSSYTYYFPGSESYIICSASNPRGRFCWILHRTTD EECCCHHHHHHHHCCCCCCCHHHHHHCCCEEECCCCCCEEEEECCCCCCCEEEEEEECCC LGYERIAVPEEYNSIEHLFWNADSELNESAGTLHSGIGIAAIKKQLVSNFKAKVFNDRKT CCCCEECCCHHHCCHHHHHCCCCCCCCHHHCHHHCCCHHHHHHHHHHHHHHHHHHCCHHH IGDAIYSRATNQDDDTRFCLLPMAKGFTTSGTETIRSLLGMAFSLGNASTTSLPKAISSI HHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LDGLGMSAVKKNNGEGILLDLDSQLHEWQTLKTEDARLILVESQKGTFDTLQSARTKYYQ HHHCCHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHH LRGSLLDSFNKTVWSIELSKTALTSKQETLKKSVSDLHAELQAFKPEHDRLRSMESEAKS HHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH DHKSAVNRLHEIDTAIKIVEECRSKLLPLCPADSRNDQSLLAVLDEQIKDCETEIASLLD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QAAAIERMKNFTSVINRNKEELELRRKALENIDSKLSFLDTITPDAASILLSINNNFAKL HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCEEEE EITPSAEQKTVIQSFAALFASEAEAVYFCGAILPGVNLKRFNNADIKRELESVIDVLIAK EECCCHHHHHHHHHHHHHHHCCCCHHEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH IEHDEKQRATISQNCRLSKERQAEKLKECTEDLEELRLQKQNLQGTELLNTQKTKAESDV HCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHH IRSKEEFDKATREFKSASEKFENLSRRYNLANEELTSVGNPLRELNNQISRLEDLESNSG HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHCCCCC RILNLEQAKLETRHSEVISQPINQIAVSVQSLKTQLSLVGEVRQECIDTMNFLLQYQIIP CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC ATPEERHQITTNSQFFEDMYGALQTVFLNLDQAKVKYRETLSHHNNTAAAAARIIENVEG CCCHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH IITNFISNINDEIKGYKISNLSSVMLVPELHAQYVDMTRTLNRIGNRIDELLSESFYVQI HHHHHHHHCCHHHCCEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE SNFQNNFYNKQTGKVEIDKIIEKVRYQFVRNDTVEDTPQSNGTNCMINSVLLALLLQRLV ECHHCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC PDDLSLSMPVVFDEIGSLDEKNFQEILKVMEEHNLYLFVANPEQNGLIASVLDTYHDLSL CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHH FKASDVGVLNKAEAIYYPGMEERLENMEFESELENVDEAMMSA EECCCCCCCCCCCEEECCCHHHHHHCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA