| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is rnfC [H]
Identifier: 117920614
GI number: 117920614
Start: 2601834
End: 2604200
Strand: Direct
Name: rnfC [H]
Synonym: Shewana3_2170
Alternate gene names: 117920614
Gene position: 2601834-2604200 (Clockwise)
Preceding gene: 117920613
Following gene: 117920615
Centisome position: 52.33
GC content: 54.08
Gene sequence:
>2367_bases GTGCTGACTTTATTAGATCAATTAGATAAAGGAACCCTTTGGCGCTCACCCGGTGGCATTCATCCACCTGAAGTCAAATT CCTCTCCAACACCACACCAATTAGCCAACTGCCATTAGCGCAGGAATACCTAGTGCCTGTGCCACAGGTAGGTGAGAACT GCACTCTTGCGGTCAAAGTGGGTGACAAAGTATTAAAAGGCGCGCCATTAACTCAAGGCACCTCGATTTGGCATTTGCCG GTGCATGCGCCAACCTCTGGCACTGTGGTCACCATTGAGCCAAGAGCCAGTAACCACGCCTCGGCCTTGCCGGTCAATAC CTGCGTGATTGCCGCTGATGGTGAAGACCGCTGGTGCGAGTTAACGCCAGGCTCAATTGAGCTCAGTAATCATGAGATGA TTGCCAAAATCCATGGCGCAGGCATTGCCGGTATGGGGGGCGCCGCCTTCCCAAGTCATATCAAGCTGAACCCCGTCAGT GAAATCGAATTAGTCATTATCAACGGCGTGGAGTGTGAGCCTTATATCAGCGCCGACGATCGCTTAATGCGCGAATACAG CCAAGACATTCTGGCGGGTATTGGGATTATCCATCGCCTCCTAGCGCCCAAGCGCATTGTGATTGCGATTGAAGACAACA AGCCCGAAGCGATTAAAGCCATGCAACAGGCGGTGAGTCAATCCGCGCTTCCAGCGGGCAGCACGCGGGTAACGGCGATA CCAACCAAGTATCCTTCTGGCGGTGAAAAGCAGCTTATTCAAATCATCACGGGGCGTGAAGTGCCCTCGGGCGCTATCCC CGCTAAGCTTGGCATTGTCGTGCATAACGTGGGAACCGCGTTTGCGATTCACCAAGCCGTGACCCAAGGTAAACCGCTGA TTGAACGTGTGGTGACAGTTACCGGGCAAAATGTGGGTAAGCCCGGCAACTATTGGTTACCCATAGGTACGCCCGTTGAG CATGTGCTCAAATACACTGAATTTAACGCCGAAGCCGATCAAAAAGTGATTATTGGCGGCCCTATGATGGGCCATGCGTT ACCAACCATCCAAGTGCCGATTTTAAAAGGCACAAACTGTATTTTGGTGCCCAGCAGTCAAGAGATTGGAACAACACCAG AGGAAAAGGCCTGTATTCGCTGCGGCGAATGTGCCAATGCCTGCCCTGCACTCCTGCTACCACAGCAACTGTTTTGGCAT GCAAAAGCCGAAGAATATGACAAGGCGGCCAGCTACAACCTTAAAGACTGTATCGAATGTGGTTGCTGTAGTTATGTGTG CCCCAGTGATATCCCACTGGTGGAATACTACCGCATCGCTAAATCGGCGCTAAAACAAGCCGCCGATGAAAAGCATCAAG CCGAGCGCGCCAAACAGCGCTTCGAGGCGCGTATTCAACGCCTCGAGGAAGAAAAACTCGCCCGCGAAGCCAAGGCTAAA GAAGCCGCTGCGCGTCGCCAAGCGACCATGACCTCAACGGACAAAAATGCCGTCGCCGAAGCCATGGCGCGGATTGCGGC CAAAAAAGCGGCTGCTGCAGAAACCACAGCGGATAACGCTCCGGTCGAGGTCGTTGCGGCTGATGCAAGCAGCACTGAGG CGCCTAAGGGTAAGGCGGCCGTTGCCGCCGCGATTGCTCGAGCTAAAGCCAAGAAAGCTGCTGCGGCTCAAGGGGCCGAT GATGCAGAATCGTCTCAACAAGCCGTGTCTCCTGAGCAAAGCGAGCCAACTGAGCAAACCGAGTCTTTATCGCAAAAAGA TAAAGTCGCCGCTGCCATCGCTCGTGCCAAAGCGAAAAAAGCGGCGTTGAAGGCCGACTCGGATGCCAATAGCGACACTG ACGCCGCGACAAGCAACACAGATAAGTCAGCAACAGAAACAACGGCTAACGCAGAAGCGGATGACAAAAAAGCCAAGGTC GCTGCAGCTGTTGCCCGTGCGAAAGCCAAAAAGGCCGCCGCACAACAAGCTGAATCGAGTGAGGTTGCCGAAGTTCAGCC CGAGCGAGTAGCTGACGCTAAGCCAGAATCAGAGTCAGGCTCTATTCCAAGCACGCCACTCAGCCCTGAAGATGAGAAAA AGGCCAAAGTCGCAGCTGCCGTTGCCCGCGCGAAAGCCAAAAAAGCCGCCACGCAGCAGGCTGAATCGACTGAGGTTGCC GAAGTTCAGCCCAAGTTAGCCGTAGACGCTGAACCAGACTCTGAATCAGGCTCTCAATCAGGCGATGAATCAAGCTCAGT CGCTGAACCAAGTGCGCCACTCAGTCCCGAAGATGAGAAGAAAGCCAAGGTCGCTGCTGCGGTTGCCCGCGCGAAAGCCA AAAAAGCGGCCAGAGAAGCGAATGCGATCAGCGACGCAAATGAATAG
Upstream 100 bases:
>100_bases CCCTGTGGGCCAAAATCTGAAAAACTGGAACTGGCGCTTAAATGCCATTCCCGTGACTCTTATCCAAGAGACCCCGCACG AAGAAAAGAGAGGATAAGCG
Downstream 100 bases:
>100_bases CACTGCGGGTTTTAACCTCAGTGCTTTGAAAATGATTAGCTTAAAAATCAGTGACTCAAGATTAGATAAAAGGGATCACA ATGGCGTTTAAAATAGCCTC
Product: electron transport complex protein RnfC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNTTPISQLPLAQEYLVPVPQVGENCTLAVKVGDKVLKGAPLTQGTSIWHLP VHAPTSGTVVTIEPRASNHASALPVNTCVIAADGEDRWCELTPGSIELSNHEMIAKIHGAGIAGMGGAAFPSHIKLNPVS EIELVIINGVECEPYISADDRLMREYSQDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQSALPAGSTRVTAI PTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVTQGKPLIERVVTVTGQNVGKPGNYWLPIGTPVE HVLKYTEFNAEADQKVIIGGPMMGHALPTIQVPILKGTNCILVPSSQEIGTTPEEKACIRCGECANACPALLLPQQLFWH AKAEEYDKAASYNLKDCIECGCCSYVCPSDIPLVEYYRIAKSALKQAADEKHQAERAKQRFEARIQRLEEEKLAREAKAK EAAARRQATMTSTDKNAVAEAMARIAAKKAAAAETTADNAPVEVVAADASSTEAPKGKAAVAAAIARAKAKKAAAAQGAD DAESSQQAVSPEQSEPTEQTESLSQKDKVAAAIARAKAKKAALKADSDANSDTDAATSNTDKSATETTANAEADDKKAKV AAAVARAKAKKAAAQQAESSEVAEVQPERVADAKPESESGSIPSTPLSPEDEKKAKVAAAVARAKAKKAATQQAESTEVA EVQPKLAVDAEPDSESGSQSGDESSSVAEPSAPLSPEDEKKAKVAAAVARAKAKKAAREANAISDANE
Sequences:
>Translated_788_residues MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNTTPISQLPLAQEYLVPVPQVGENCTLAVKVGDKVLKGAPLTQGTSIWHLP VHAPTSGTVVTIEPRASNHASALPVNTCVIAADGEDRWCELTPGSIELSNHEMIAKIHGAGIAGMGGAAFPSHIKLNPVS EIELVIINGVECEPYISADDRLMREYSQDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQSALPAGSTRVTAI PTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVTQGKPLIERVVTVTGQNVGKPGNYWLPIGTPVE HVLKYTEFNAEADQKVIIGGPMMGHALPTIQVPILKGTNCILVPSSQEIGTTPEEKACIRCGECANACPALLLPQQLFWH AKAEEYDKAASYNLKDCIECGCCSYVCPSDIPLVEYYRIAKSALKQAADEKHQAERAKQRFEARIQRLEEEKLAREAKAK EAAARRQATMTSTDKNAVAEAMARIAAKKAAAAETTADNAPVEVVAADASSTEAPKGKAAVAAAIARAKAKKAAAAQGAD DAESSQQAVSPEQSEPTEQTESLSQKDKVAAAIARAKAKKAALKADSDANSDTDAATSNTDKSATETTANAEADDKKAKV AAAVARAKAKKAAAQQAESSEVAEVQPERVADAKPESESGSIPSTPLSPEDEKKAKVAAAVARAKAKKAATQQAESTEVA EVQPKLAVDAEPDSESGSQSGDESSSVAEPSAPLSPEDEKKAKVAAAVARAKAKKAAREANAISDANE >Mature_788_residues MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNTTPISQLPLAQEYLVPVPQVGENCTLAVKVGDKVLKGAPLTQGTSIWHLP VHAPTSGTVVTIEPRASNHASALPVNTCVIAADGEDRWCELTPGSIELSNHEMIAKIHGAGIAGMGGAAFPSHIKLNPVS EIELVIINGVECEPYISADDRLMREYSQDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQSALPAGSTRVTAI PTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVTQGKPLIERVVTVTGQNVGKPGNYWLPIGTPVE HVLKYTEFNAEADQKVIIGGPMMGHALPTIQVPILKGTNCILVPSSQEIGTTPEEKACIRCGECANACPALLLPQQLFWH AKAEEYDKAASYNLKDCIECGCCSYVCPSDIPLVEYYRIAKSALKQAADEKHQAERAKQRFEARIQRLEEEKLAREAKAK EAAARRQATMTSTDKNAVAEAMARIAAKKAAAAETTADNAPVEVVAADASSTEAPKGKAAVAAAIARAKAKKAAAAQGAD DAESSQQAVSPEQSEPTEQTESLSQKDKVAAAIARAKAKKAALKADSDANSDTDAATSNTDKSATETTANAEADDKKAKV AAAVARAKAKKAAAQQAESSEVAEVQPERVADAKPESESGSIPSTPLSPEDEKKAKVAAAVARAKAKKAATQQAESTEVA EVQPKLAVDAEPDSESGSQSGDESSSVAEPSAPLSPEDEKKAKVAAAVARAKAKKAAREANAISDANE
Specific function: May be part of a membrane complex involved in electron transport [H]
COG id: COG4656
COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI1787916, Length=570, Percent_Identity=46.6666666666667, Blast_Score=504, Evalue=1e-144,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR010208 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 82653; Mature: 82653
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNTTPISQLPLAQEYLVPVPQVGENCTLAVKV CCCHHHHCCCCCEECCCCCCCCCCEEEECCCCCHHHCCCHHHHCCCCCCCCCCCEEEEEE GDKVLKGAPLTQGTSIWHLPVHAPTSGTVVTIEPRASNHASALPVNTCVIAADGEDRWCE CCHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEE LTPGSIELSNHEMIAKIHGAGIAGMGGAAFPSHIKLNPVSEIELVIINGVECEPYISADD ECCCEEEECCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCHH RLMREYSQDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQSALPAGSTRVTAI HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEE PTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVTQGKPLIERVVTV CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCEEEECCCHHHHHHHHHHCCCHHHHHHHHH TGQNVGKPGNYWLPIGTPVEHVLKYTEFNAEADQKVIIGGPMMGHALPTIQVPILKGTNC CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCEEEEEEECCCE ILVPSSQEIGTTPEEKACIRCGECANACPALLLPQQLFWHAKAEEYDKAASYNLKDCIEC EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHH GCCSYVCPSDIPLVEYYRIAKSALKQAADEKHQAERAKQRFEARIQRLEEEKLAREAKAK CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAAARRQATMTSTDKNAVAEAMARIAAKKAAAAETTADNAPVEVVAADASSTEAPKGKAA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHH VAAAIARAKAKKAAAAQGADDAESSQQAVSPEQSEPTEQTESLSQKDKVAAAIARAKAKK HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AALKADSDANSDTDAATSNTDKSATETTANAEADDKKAKVAAAVARAKAKKAAAQQAESS HHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC EVAEVQPERVADAKPESESGSIPSTPLSPEDEKKAKVAAAVARAKAKKAATQQAESTEVA HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH EVQPKLAVDAEPDSESGSQSGDESSSVAEPSAPLSPEDEKKAKVAAAVARAKAKKAAREA HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH NAISDANE HHHCCCCC >Mature Secondary Structure MLTLLDQLDKGTLWRSPGGIHPPEVKFLSNTTPISQLPLAQEYLVPVPQVGENCTLAVKV CCCHHHHCCCCCEECCCCCCCCCCEEEECCCCCHHHCCCHHHHCCCCCCCCCCCEEEEEE GDKVLKGAPLTQGTSIWHLPVHAPTSGTVVTIEPRASNHASALPVNTCVIAADGEDRWCE CCHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEE LTPGSIELSNHEMIAKIHGAGIAGMGGAAFPSHIKLNPVSEIELVIINGVECEPYISADD ECCCEEEECCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCCCCHH RLMREYSQDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQSALPAGSTRVTAI HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEE PTKYPSGGEKQLIQIITGREVPSGAIPAKLGIVVHNVGTAFAIHQAVTQGKPLIERVVTV CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHCEEEECCCHHHHHHHHHHCCCHHHHHHHHH TGQNVGKPGNYWLPIGTPVEHVLKYTEFNAEADQKVIIGGPMMGHALPTIQVPILKGTNC CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCEEEECCCHHHCCCCCEEEEEEECCCE ILVPSSQEIGTTPEEKACIRCGECANACPALLLPQQLFWHAKAEEYDKAASYNLKDCIEC EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHH GCCSYVCPSDIPLVEYYRIAKSALKQAADEKHQAERAKQRFEARIQRLEEEKLAREAKAK CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAAARRQATMTSTDKNAVAEAMARIAAKKAAAAETTADNAPVEVVAADASSTEAPKGKAA HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHH VAAAIARAKAKKAAAAQGADDAESSQQAVSPEQSEPTEQTESLSQKDKVAAAIARAKAKK HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AALKADSDANSDTDAATSNTDKSATETTANAEADDKKAKVAAAVARAKAKKAAAQQAESS HHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC EVAEVQPERVADAKPESESGSIPSTPLSPEDEKKAKVAAAVARAKAKKAATQQAESTEVA HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH EVQPKLAVDAEPDSESGSQSGDESSSVAEPSAPLSPEDEKKAKVAAAVARAKAKKAAREA HCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH NAISDANE HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 4Fe-4S clusters [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA