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The map label for this gene is rnfB [H]

Identifier: 117920613

GI number: 117920613

Start: 2601249

End: 2601830

Strand: Direct

Name: rnfB [H]

Synonym: Shewana3_2169

Alternate gene names: 117920613

Gene position: 2601249-2601830 (Clockwise)

Preceding gene: 117920612

Following gene: 117920614

Centisome position: 52.32

GC content: 50.69

Gene sequence:

>582_bases
ATGTCCACCATGTTAATTGCCGTTATCTTACTGACCCTATTGGCATTGTTCTTTGGGGTATTACTCGGATTTGCTGCCTT
AAAATTTAAGGTTGAAGGCAATCCCATTGTCGATGAACTCGAAGCGATTCTGCCACAAACCCAATGCGGTCAATGTGGTT
ATCCCGGTTGCCGCCCCTACGCCGAAGCCATTGCTAATGGCGATAAAGTCAACAAGTGTCCTCCCGGCGGCACTGCAACC
ATGGAAAAGCTCGCCAACTTAATGGGTGTCGAGCCAGAGCCGCTCAATGCCGAGGCTCAGTCCCAAGTCAAAAAAGTCGC
CTACATTCGCGAAGATGAGTGTATCGGCTGCACTAAGTGTATTCAGGCCTGTCCTGTCGACGCCATTATTGGTGCGGGCA
AACTCATGCATACCGTGCTCACGGCAGACTGCACAGGTTGCGATCTCTGTGTCGAGCCCTGCCCCGTTGACTGTATCGAT
ATGATCCCTGTGGGCCAAAATCTGAAAAACTGGAACTGGCGCTTAAATGCCATTCCCGTGACTCTTATCCAAGAGACCCC
GCACGAAGAAAAGAGAGGATAA

Upstream 100 bases:

>100_bases
CGCCGATGTGCCAATGCCGTTTAAGGGCGGCGCCATCGCCATGATCACCGCAGGCTTAATGTCTTTAGCCTTTATGGGAT
TCACAGGATTGGTTAAATAG

Downstream 100 bases:

>100_bases
GCGGTGCTGACTTTATTAGATCAATTAGATAAAGGAACCCTTTGGCGCTCACCCGGTGGCATTCATCCACCTGAAGTCAA
ATTCCTCTCCAACACCACAC

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSTMLIAVILLTLLALFFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGTAT
MEKLANLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCID
MIPVGQNLKNWNWRLNAIPVTLIQETPHEEKRG

Sequences:

>Translated_193_residues
MSTMLIAVILLTLLALFFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGTAT
MEKLANLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCID
MIPVGQNLKNWNWRLNAIPVTLIQETPHEEKRG
>Mature_192_residues
STMLIAVILLTLLALFFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPYAEAIANGDKVNKCPPGGTATM
EKLANLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKCIQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDM
IPVGQNLKNWNWRLNAIPVTLIQETPHEEKRG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=191, Percent_Identity=56.5445026178011, Blast_Score=231, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 20760; Mature: 20628

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
9.8 %Cys+Met (Translated Protein)
6.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
9.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTMLIAVILLTLLALFFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKVNKCPPGGTATMEKLANLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDMIPVGQNLKNWNWRLNAIPV
HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEE
TLIQETPHEEKRG
EEECCCCCCCCCC
>Mature Secondary Structure 
STMLIAVILLTLLALFFGVLLGFAALKFKVEGNPIVDELEAILPQTQCGQCGYPGCRPY
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIANGDKVNKCPPGGTATMEKLANLMGVEPEPLNAEAQSQVKKVAYIREDECIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAIIGAGKLMHTVLTADCTGCDLCVEPCPVDCIDMIPVGQNLKNWNWRLNAIPV
HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEEE
TLIQETPHEEKRG
EEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]