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The map label for this gene is ygcF [H]

Identifier: 117920607

GI number: 117920607

Start: 2592129

End: 2592797

Strand: Reverse

Name: ygcF [H]

Synonym: Shewana3_2163

Alternate gene names: 117920607

Gene position: 2592797-2592129 (Counterclockwise)

Preceding gene: 117920610

Following gene: 117920606

Centisome position: 52.15

GC content: 49.18

Gene sequence:

>669_bases
ATGAATTACCCAGTCAACGAAGTCTTTGAAACCATTCAAGGTGAAGGTGTCTTTACCGGAGTGCCCGCCATTTTTGTGCG
TTTACAGGGTTGCCCTGTGGGATGTGCTTGGTGTGATACGAAACAGACTTGGGATCTGCTTGAGGAAAAGAAGGTGTCAC
CTGAACAAGTGATCACCGTCGATGGCTCCGTGGGGCGCTGGGCGAATCATACGGCGCAGAGTCTTATTGATGCGTTCAAC
GCTAAGGGATACACGGCGCGACATGTGGTGATCACCGGTGGTGAGCCTTGTATGTACGATCTGAATGAATTAACTCACAC
GCTTCATGCTGCCGGTTTTGCCACTCAAATCGAGACCAGTGGCACCTTTGAGGTGAAGTGCGATGCTGATACCTGGGTGA
CTGTCTCGCCAAAAATCAATATGAAAGGGGGTTATAAGGTGTTAGCGCAGGCCTTGATCCGCGCCAACGAGATTAAGCAC
CCGATAGCGACCGAAAATCATATCGACGAACTCGATGAGTTACTCAAAGGGATTGATGTGTCAGCGAAAACGATTTGTCT
GCAACCGATCAGCCAAAAGCCAAGGGCGACGGAATTAGCCATGAAGGTGTGTATTGCCCGCAACTGGCGTTTATCGATTC
AGACCCATAAGTACTTGAATATCGATTAA

Upstream 100 bases:

>100_bases
GGCATATCGCTCTTGGCATCACTCTGTGTGAGGCGGTAAAAACTTGCAGCTGCAGCTAAAATCCTCTATAAATGCCGCCC
CAGAAAAACGGAACGCTAGC

Downstream 100 bases:

>100_bases
TTGCCACTTAGCTCAGCAGCATTGGTCTCTAATGCTTAGAAATAGTTTTAACGCTCCGAATGGGGCGTTTTTTATCAGCA
AAATCTATGGATTAAAAGCA

Product: radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLEEKKVSPEQVITVDGSVGRWANHTAQSLIDAFN
AKGYTARHVVITGGEPCMYDLNELTHTLHAAGFATQIETSGTFEVKCDADTWVTVSPKINMKGGYKVLAQALIRANEIKH
PIATENHIDELDELLKGIDVSAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID

Sequences:

>Translated_222_residues
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLEEKKVSPEQVITVDGSVGRWANHTAQSLIDAFN
AKGYTARHVVITGGEPCMYDLNELTHTLHAAGFATQIETSGTFEVKCDADTWVTVSPKINMKGGYKVLAQALIRANEIKH
PIATENHIDELDELLKGIDVSAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID
>Mature_222_residues
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLEEKKVSPEQVITVDGSVGRWANHTAQSLIDAFN
AKGYTARHVVITGGEPCMYDLNELTHTLHAAGFATQIETSGTFEVKCDADTWVTVSPKINMKGGYKVLAQALIRANEIKH
PIATENHIDELDELLKGIDVSAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=222, Percent_Identity=60.8108108108108, Blast_Score=289, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24584; Mature: 24584

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLEEKKVSPEQVITV
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCCEEEE
DGSVGRWANHTAQSLIDAFNAKGYTARHVVITGGEPCMYDLNELTHTLHAAGFATQIETS
CCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEHHHHHHHHHHHCCCCEEEECC
GTFEVKCDADTWVTVSPKINMKGGYKVLAQALIRANEIKHPIATENHIDELDELLKGIDV
CEEEEEECCCCEEEECCCEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
SAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID
CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECC
>Mature Secondary Structure
MNYPVNEVFETIQGEGVFTGVPAIFVRLQGCPVGCAWCDTKQTWDLLEEKKVSPEQVITV
CCCCHHHHHHHHCCCCEEECCCEEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCCEEEE
DGSVGRWANHTAQSLIDAFNAKGYTARHVVITGGEPCMYDLNELTHTLHAAGFATQIETS
CCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEHHHHHHHHHHHCCCCEEEECC
GTFEVKCDADTWVTVSPKINMKGGYKVLAQALIRANEIKHPIATENHIDELDELLKGIDV
CEEEEEECCCCEEEECCCEECCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
SAKTICLQPISQKPRATELAMKVCIARNWRLSIQTHKYLNID
CCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]