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The map label for this gene is yciR [C]

Identifier: 117920604

GI number: 117920604

Start: 2587987

End: 2590170

Strand: Reverse

Name: yciR [C]

Synonym: Shewana3_2160

Alternate gene names: 117920604

Gene position: 2590170-2587987 (Counterclockwise)

Preceding gene: 117920605

Following gene: 117920601

Centisome position: 52.09

GC content: 49.08

Gene sequence:

>2184_bases
GTGAAGCGACGTCAGCATCAGCATTTATTAGAGTCTTTAGTGCATTCCACGGCTAAACAGCAGGGTGATTTTACTAAGAC
CGCAGAGTTAGCCACTGAGCTACTTTGCCAAAATTTAGCCGTTTCTCTGGTGTCGGTTTGGATTTTTTCCGCCGACCAAT
CGAGCCAATCCCTAGTGGCGCAATTTGGCGCTATGCCCCTACAAGACACTTACCGCCCCTCGCAGTTGCAGACGCTGCCT
TGTTATTTAAATGAACTCAAAAATCATCGCCATATCGATGCGGGTAATACCCTTATCGATCCACGCTTGACTGAGTTAGT
CGATAACTACTTTATCCCTCGGCAAATTTTATCTAGTCTCGAGATTGGCATTCGCATTAATGGTCATCTCGAAGGCGTGC
TTTGCCTAGAGCGAGCGCAAGTTACTCACCATTGGCACGATAGCGAAATCCATCTTGCCTGCCAAATGGCCGATCAACTG
GCCCTCACGCTGGCCACTAAACATACCTATGATAAAGAAGAGCGCCTAAGCCTATTTCGCTGTGCCACCGAGCAGTCACG
CCAGATGAGCATGCTGATTAACCTGCACACTGAAAAAGTCGAGTACGTGAACCAAGCCCATGAAGAGATCACCGGCTTAG
CGCGTGAAAAAAGTATTGGCGCCAATTTACGTGAGCTAAGTTTTTTTAAGCAGCACAATCAATTAGCTGAGCAAACTCTC
GCGCAGATCTTCAGGGGTGAGCAGGCCAAGGGCGAGGTACAATTTAATCGAGCAGATGGTAGTCGCTACTGGCTCAAATA
TGTAGTCAGTCAATTTATCACCGATCGCGGCAATCATTACGCCTTAGTGTCGGGCGAGGAAAGCACGGATGAGCACAATT
ATAAGGCGGAGCTTGAGCGTCTAGCCTGGCGTTGTAGCCTCACTGGGCTGAATAATCGCAGTCACTTCAATCGCGTATTG
GAGCGCACTACCAATGGATTGTTGCTGTTGGTCGATTTAGTCGCCTTTAAACGTTTCAACGATACCTATGGCCACGAAAA
TGGCGACAGCTTGCTGATCGAAATTGGCCGGCGCTTAAAACATTTTTCGGAAATCAATAAGGCAACCGAAATTGCCCGCG
TCGGTAGCGACGAGTTTGCCGTGTTGCTCACCGATGATAACGCGGTTTACGATCTGGATTATTTCAGTACCCGCCTATAT
CAGCATTTAGCCATGCCGATTTTAATCGGTCGTGAGCAAATCGAACCTAAACCCGCACTGGCGGTTGTCGATATCGCCTC
GGTGGCCAATCTGTTCGCACCGCTGACCTGCGCCGATATTGCGGTGCAATACGCAAAGAAGAAAAAGGGTACAGCTATTC
AAGTGTTTAACAGCACCTTGCTCAGTGCCTTTAAGGAAGATGCGCAAATCGAGCGTGATTTACATAGCGCGATTCGCGGT
CGTCAATTCGAACTTTATTATCAGCCCTTACGGGATCTGGAGCAGAAAACCTATATCGGTGCCGAAGCCCTGATCCGTTG
GCATCACCCGAAAAAAGGTGTGCTGTATCCCGGCGCCTTTATCGATATTGCCGAGCAATCTGGGATGATAAATGCCATTG
GCAGTTGGGTGCTGGAGGCCGCGTGCCGACAATTGAATATATGGCAGCACCATAATGCCGATTTAAGCATGCATGTTAAC
GTGTCGGCGCGGCAGTTTTTTAGCGGAAACCTGTATGAGCAAGTCTGGCAACTGCTGACGCGCTATCGTTTAAAGCCTAA
AACCCTGATCCTTGAGATCACCGAGACGGAATTGATGGGCGACATTCGCCATGCCACGCTCTTATGTCAGGAATTGGCAG
AGCTGGGTGTGGGGCTGGCCATAGATGACTTTGGCACCGGTTACAGCTCGATGCGCTATCTTAAACAATTCCCGATCAGT
AAGTTAAAAATCGACCGCTCCTTTATCTCCGATCTCGCCATTAGCCGCGAAAGCCAAGAAATCGTCTCGGCCATTATTGC
GATGGCGAGCGCGCTTAATATTTCCTTGACCGCCGAAGGGGTTGAAACCGCCGAGCAGGAAGCGTTTTTAGCCAAGAGTT
TTTGCCATCAGGCGCAGGGGTATTTATACAGTCCTGCGTTGCGAGAGCCCGAATTTGCGCAATTCTCATTGGTGGCAAAA
GAACCTAATCTTGTTACGCATTAA

Upstream 100 bases:

>100_bases
ACAAAAATATTCAGGATTGGCGCAATTAGCACGCTGAAATGAGTCGTGCTACTCGCTGTAGTATCTGTGTTACCCAACAC
GAAGTTTTGTAGGAATCAGA

Downstream 100 bases:

>100_bases
CCAGTTAGATTAGTCGTACAGGTGATATAAAAACAAAAGGCAATCAATAGATTGCCTTTTGTTTTATCTGTGGACTTGGT
TAACCCTTCATGCAGCACTG

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 727; Mature: 727

Protein sequence:

>727_residues
MKRRQHQHLLESLVHSTAKQQGDFTKTAELATELLCQNLAVSLVSVWIFSADQSSQSLVAQFGAMPLQDTYRPSQLQTLP
CYLNELKNHRHIDAGNTLIDPRLTELVDNYFIPRQILSSLEIGIRINGHLEGVLCLERAQVTHHWHDSEIHLACQMADQL
ALTLATKHTYDKEERLSLFRCATEQSRQMSMLINLHTEKVEYVNQAHEEITGLAREKSIGANLRELSFFKQHNQLAEQTL
AQIFRGEQAKGEVQFNRADGSRYWLKYVVSQFITDRGNHYALVSGEESTDEHNYKAELERLAWRCSLTGLNNRSHFNRVL
ERTTNGLLLLVDLVAFKRFNDTYGHENGDSLLIEIGRRLKHFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLY
QHLAMPILIGREQIEPKPALAVVDIASVANLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
RQFELYYQPLRDLEQKTYIGAEALIRWHHPKKGVLYPGAFIDIAEQSGMINAIGSWVLEAACRQLNIWQHHNADLSMHVN
VSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPIS
KLKIDRSFISDLAISRESQEIVSAIIAMASALNISLTAEGVETAEQEAFLAKSFCHQAQGYLYSPALREPEFAQFSLVAK
EPNLVTH

Sequences:

>Translated_727_residues
MKRRQHQHLLESLVHSTAKQQGDFTKTAELATELLCQNLAVSLVSVWIFSADQSSQSLVAQFGAMPLQDTYRPSQLQTLP
CYLNELKNHRHIDAGNTLIDPRLTELVDNYFIPRQILSSLEIGIRINGHLEGVLCLERAQVTHHWHDSEIHLACQMADQL
ALTLATKHTYDKEERLSLFRCATEQSRQMSMLINLHTEKVEYVNQAHEEITGLAREKSIGANLRELSFFKQHNQLAEQTL
AQIFRGEQAKGEVQFNRADGSRYWLKYVVSQFITDRGNHYALVSGEESTDEHNYKAELERLAWRCSLTGLNNRSHFNRVL
ERTTNGLLLLVDLVAFKRFNDTYGHENGDSLLIEIGRRLKHFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLY
QHLAMPILIGREQIEPKPALAVVDIASVANLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
RQFELYYQPLRDLEQKTYIGAEALIRWHHPKKGVLYPGAFIDIAEQSGMINAIGSWVLEAACRQLNIWQHHNADLSMHVN
VSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPIS
KLKIDRSFISDLAISRESQEIVSAIIAMASALNISLTAEGVETAEQEAFLAKSFCHQAQGYLYSPALREPEFAQFSLVAK
EPNLVTH
>Mature_727_residues
MKRRQHQHLLESLVHSTAKQQGDFTKTAELATELLCQNLAVSLVSVWIFSADQSSQSLVAQFGAMPLQDTYRPSQLQTLP
CYLNELKNHRHIDAGNTLIDPRLTELVDNYFIPRQILSSLEIGIRINGHLEGVLCLERAQVTHHWHDSEIHLACQMADQL
ALTLATKHTYDKEERLSLFRCATEQSRQMSMLINLHTEKVEYVNQAHEEITGLAREKSIGANLRELSFFKQHNQLAEQTL
AQIFRGEQAKGEVQFNRADGSRYWLKYVVSQFITDRGNHYALVSGEESTDEHNYKAELERLAWRCSLTGLNNRSHFNRVL
ERTTNGLLLLVDLVAFKRFNDTYGHENGDSLLIEIGRRLKHFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLY
QHLAMPILIGREQIEPKPALAVVDIASVANLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
RQFELYYQPLRDLEQKTYIGAEALIRWHHPKKGVLYPGAFIDIAEQSGMINAIGSWVLEAACRQLNIWQHHNADLSMHVN
VSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMGDIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPIS
KLKIDRSFISDLAISRESQEIVSAIIAMASALNISLTAEGVETAEQEAFLAKSFCHQAQGYLYSPALREPEFAQFSLVAK
EPNLVTH

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=532, Percent_Identity=29.8872180451128, Blast_Score=223, Evalue=4e-59,
Organism=Escherichia coli, GI87081921, Length=450, Percent_Identity=30.2222222222222, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI226510982, Length=423, Percent_Identity=29.7872340425532, Blast_Score=182, Evalue=9e-47,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=34.6938775510204, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=32.4894514767932, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=31.2757201646091, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=33.8461538461538, Blast_Score=139, Evalue=9e-34,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=33.0612244897959, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081845, Length=245, Percent_Identity=33.0612244897959, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1787055, Length=250, Percent_Identity=32.8, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=30.8641975308642, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87082096, Length=218, Percent_Identity=31.1926605504587, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI1788381, Length=212, Percent_Identity=27.3584905660377, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787410, Length=123, Percent_Identity=30.8943089430894, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82547; Mature: 82547

Theoretical pI: Translated: 6.48; Mature: 6.48

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRQHQHLLESLVHSTAKQQGDFTKTAELATELLCQNLAVSLVSVWIFSADQSSQSLVA
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QFGAMPLQDTYRPSQLQTLPCYLNELKNHRHIDAGNTLIDPRLTELVDNYFIPRQILSSL
HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHC
EIGIRINGHLEGVLCLERAQVTHHWHDSEIHLACQMADQLALTLATKHTYDKEERLSLFR
CCCEEECCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
CATEQSRQMSMLINLHTEKVEYVNQAHEEITGLAREKSIGANLRELSFFKQHNQLAEQTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AQIFRGEQAKGEVQFNRADGSRYWLKYVVSQFITDRGNHYALVSGEESTDEHNYKAELER
HHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHH
LAWRCSLTGLNNRSHFNRVLERTTNGLLLLVDLVAFKRFNDTYGHENGDSLLIEIGRRLK
HHHHHEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHCCCCCCCHHHHHHHHHHH
HFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQIEPKPAL
HHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
AVVDIASVANLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
RQFELYYQPLRDLEQKTYIGAEALIRWHHPKKGVLYPGAFIDIAEQSGMINAIGSWVLEA
CEEEEHHHHHHHHHHHHHCCHHHHHEECCCCCCEECCCHHEEHHHCCCCHHHHHHHHHHH
ACRQLNIWQHHNADLSMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMG
HHHHCCCCCCCCCCEEEEEECHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHH
DIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLAISRESQE
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
IVSAIIAMASALNISLTAEGVETAEQEAFLAKSFCHQAQGYLYSPALREPEFAQFSLVAK
HHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEEC
EPNLVTH
CCCCCCC
>Mature Secondary Structure
MKRRQHQHLLESLVHSTAKQQGDFTKTAELATELLCQNLAVSLVSVWIFSADQSSQSLVA
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
QFGAMPLQDTYRPSQLQTLPCYLNELKNHRHIDAGNTLIDPRLTELVDNYFIPRQILSSL
HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHCCCCHHHHHHHC
EIGIRINGHLEGVLCLERAQVTHHWHDSEIHLACQMADQLALTLATKHTYDKEERLSLFR
CCCEEECCCCCEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
CATEQSRQMSMLINLHTEKVEYVNQAHEEITGLAREKSIGANLRELSFFKQHNQLAEQTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AQIFRGEQAKGEVQFNRADGSRYWLKYVVSQFITDRGNHYALVSGEESTDEHNYKAELER
HHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHH
LAWRCSLTGLNNRSHFNRVLERTTNGLLLLVDLVAFKRFNDTYGHENGDSLLIEIGRRLK
HHHHHEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHCCCCCCCHHHHHHHHHHH
HFSEINKATEIARVGSDEFAVLLTDDNAVYDLDYFSTRLYQHLAMPILIGREQIEPKPAL
HHHHHHHHHHHHHCCCCCEEEEEECCCCEEEHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
AVVDIASVANLFAPLTCADIAVQYAKKKKGTAIQVFNSTLLSAFKEDAQIERDLHSAIRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCC
RQFELYYQPLRDLEQKTYIGAEALIRWHHPKKGVLYPGAFIDIAEQSGMINAIGSWVLEA
CEEEEHHHHHHHHHHHHHCCHHHHHEECCCCCCEECCCHHEEHHHCCCCHHHHHHHHHHH
ACRQLNIWQHHNADLSMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMG
HHHHCCCCCCCCCCEEEEEECHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEEHHHHHH
DIRHATLLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKLKIDRSFISDLAISRESQE
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
IVSAIIAMASALNISLTAEGVETAEQEAFLAKSFCHQAQGYLYSPALREPEFAQFSLVAK
HHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEEC
EPNLVTH
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]