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The map label for this gene is ydaL [H]

Identifier: 117920601

GI number: 117920601

Start: 2586084

End: 2586674

Strand: Reverse

Name: ydaL [H]

Synonym: Shewana3_2157

Alternate gene names: 117920601

Gene position: 2586674-2586084 (Counterclockwise)

Preceding gene: 117920604

Following gene: 117920599

Centisome position: 52.02

GC content: 49.75

Gene sequence:

>591_bases
ATGCTAGATGATGAATCAGCACTGTTTTTTGAAGAAATGGCGGGGGTTGTGCCACTTAAGGGTGATGTGAAAGCGGTGAA
TTTGCAGCCTAAGGCACTAACGGAGGAGCAACTTCAGCGCCGTGATGCGTTGCAACGCGAGGCTTATTTAGCCTGTATGC
CCTTGGATTTGAGTTTGATCCCGATAATAGCGCCCGATGATATTGCCAGTTTTAAGCGCGAAGGGGTGCAAGGGGCAGTG
TTTAAGCGCTTAAGGCTAGGGCAGTACAGCATTAAGATGGAATTAGATGTACATGCCTACCGTTTAAGTCAGGCCCGTGA
TGCGTTGCTCAATTATCTGTTAGCGGCGCAGGCCCATGGGGAACGCTGCGTCATGCTTATCCATGGTAAGGGTCATAACA
GTAAACCCGTGGCAGGCCTGTTGAAATCTGCCGTCTGCCATTGGTTGTCTCAACTTGATATGGTGCTGGCCTATCATTCG
ACGAAAACCGAGCAGGGCGGCACGGGCGCCTTGTATGTGATGCTCACTAAATCCGAACAGCTTAAGATTGAGAACAAAGA
GGCAAATCGTAAGGGAATGGGTTGGCGTTAA

Upstream 100 bases:

>100_bases
CTATAATGGAGGTGCCCGCTGAACTAAAGGGTTGAATGTTTACAAAGTGTGTTTCTGTTCTAAAAGTGCACACTGAGTGT
TAAGAGTGGAGGAGCTTGCC

Downstream 100 bases:

>100_bases
TAGGTTTCTGAACGCATTGATTTTATCTGATTGATACTCGCGTTCGTTATTAATGCCGAAGCTTAAAAGAAAATGCCCAA
CATCGTTGGGCATTTTTATC

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MLDDESALFFEEMAGVVPLKGDVKAVNLQPKALTEEQLQRRDALQREAYLACMPLDLSLIPIIAPDDIASFKREGVQGAV
FKRLRLGQYSIKMELDVHAYRLSQARDALLNYLLAAQAHGERCVMLIHGKGHNSKPVAGLLKSAVCHWLSQLDMVLAYHS
TKTEQGGTGALYVMLTKSEQLKIENKEANRKGMGWR

Sequences:

>Translated_196_residues
MLDDESALFFEEMAGVVPLKGDVKAVNLQPKALTEEQLQRRDALQREAYLACMPLDLSLIPIIAPDDIASFKREGVQGAV
FKRLRLGQYSIKMELDVHAYRLSQARDALLNYLLAAQAHGERCVMLIHGKGHNSKPVAGLLKSAVCHWLSQLDMVLAYHS
TKTEQGGTGALYVMLTKSEQLKIENKEANRKGMGWR
>Mature_196_residues
MLDDESALFFEEMAGVVPLKGDVKAVNLQPKALTEEQLQRRDALQREAYLACMPLDLSLIPIIAPDDIASFKREGVQGAV
FKRLRLGQYSIKMELDVHAYRLSQARDALLNYLLAAQAHGERCVMLIHGKGHNSKPVAGLLKSAVCHWLSQLDMVLAYHS
TKTEQGGTGALYVMLTKSEQLKIENKEANRKGMGWR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=188, Percent_Identity=35.6382978723404, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788671, Length=182, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 21863; Mature: 21863

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDDESALFFEEMAGVVPLKGDVKAVNLQPKALTEEQLQRRDALQREAYLACMPLDLSLI
CCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHEEEEECCCCEEE
PIIAPDDIASFKREGVQGAVFKRLRLGQYSIKMELDVHAYRLSQARDALLNYLLAAQAHG
EEECCCHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCC
ERCVMLIHGKGHNSKPVAGLLKSAVCHWLSQLDMVLAYHSTKTEQGGTGALYVMLTKSEQ
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCE
LKIENKEANRKGMGWR
EEEECCCCCCCCCCCC
>Mature Secondary Structure
MLDDESALFFEEMAGVVPLKGDVKAVNLQPKALTEEQLQRRDALQREAYLACMPLDLSLI
CCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHEEEEECCCCEEE
PIIAPDDIASFKREGVQGAVFKRLRLGQYSIKMELDVHAYRLSQARDALLNYLLAAQAHG
EEECCCHHHHHHHCCCCHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCC
ERCVMLIHGKGHNSKPVAGLLKSAVCHWLSQLDMVLAYHSTKTEQGGTGALYVMLTKSEQ
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCE
LKIENKEANRKGMGWR
EEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]