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The map label for this gene is rarA [H]

Identifier: 117920496

GI number: 117920496

Start: 2461370

End: 2462701

Strand: Direct

Name: rarA [H]

Synonym: Shewana3_2052

Alternate gene names: 117920496

Gene position: 2461370-2462701 (Clockwise)

Preceding gene: 117920495

Following gene: 117920497

Centisome position: 49.5

GC content: 52.63

Gene sequence:

>1332_bases
GTGAGCAGTTTATCGTTTAATTTTGCGCCTGATTTTCGTCCCTTAGCCGCGCGTATGCGGCCAAGGACGATTGCCGAGTA
TATAGGTCAAGCCCATTTGTTGGGGGAAGGCCAACCACTGCGCCAAGCATTAGAAGCGGGCCGAGCCCATTCGATGATGT
TATGGGGACCGCCGGGCACAGGTAAAACGACACTTGCCGAACTTATCGCCCATTATTCCAATGCCCATGTTGAACGCATC
TCGGCGGTCACCTCGGGGGTAAAAGACATTCGCGCCGCTATCGAGCAGGCCCAAGCCGTTGCCCAGTCTCGTGGCCAACG
CACCTTGCTGTTTGTCGATGAAGTGCATCGCTTTAATAAGAGTCAGCAGGACGCCTTTTTGCCCTTCATTGAAGATGGCA
CTGTGATTTTTATTGGGGCGACCACTGAAAACCCTTCATTTGAAATCAATAACGCCTTGCTGTCACGGGCGCGTGTCTAT
CTTATCAAGCGCTTAAGCCAAGACGAGATAGTGCATATCATCACCCAAGCCTTAACGGATCCCGAACGTGGGTTAGGGCA
ACGCCAGTTAGTCATGCCAACGGATGTGCTCAATAAGCTGGCGCAGCTCTGTGACGGTGATGCGCGCAAGGCGCTAAACC
TGCTTGAGCTGATGAGCGATATGGTGGCCGATGGCGGCAGTTTTACCACTGAGATGCTAGTTCAAGTCGCTGGCCATCAA
GTGGCGGGGTTCGATAAAAATGGCGATCAGTTTTACGATTTGATTTCGGCGGTACATAAATCGATTCGTGGCTCTGCGCC
CGACGCTGCGCTGTACTGGTTTTGCCGTATTTTAGAAGGCGGCGGCGATCCGCTATATGTCGCCAGACGCTTATTAGCCA
TAGCCTCGGAAGATGTGGGCAATGCAGACCCTAATGCCATGACAGTCGCGCTCAATGCTTGGGATTGTTTCCATCGCGTT
GGGCCTGCCGAAGGTGAGCGGGCGATTGCCCAAGCGATTGTGTATTTAGCCAGTGCACCTAAGAGTAATGCCGTTTACAC
CGCCTTTAAAGCGGCGAGGGCGCTGGCCCGCGAAACCGGCCAAGAGGCCGTGCCCTATCATCTGCGCAATGCGCCGACCA
AACTTATGGCGGAAATGGGTTTTGGCGCCGAATATCGCTATGCCCACGATGAACCCAATGCCTATGCCAGCGGCGAGAAT
TATTTCCCCGAATCCTTACAAGAGTCGCAATTTTATTTCCCGACCGAACGCGGATTTGAGAAGCGAATTAAGGACAAATT
GGCGCAATTAGCGCAATTAGATCAAGCCAGTGGGAGAAAAAGGTATGAATAA

Upstream 100 bases:

>100_bases
AACACAGCATTAGCGCCGCGGATAAAGCGTTATTTAAGTTCGTGTTGCCAGAAAACGTTGATGTGGATGATCAACGTCTT
AAAAGCCAGTAGGTTTACGC

Downstream 100 bases:

>100_bases
TCTCTTACTTGTGGCCTTGGGTGGTTCCATTGGTGCGGTTTTTCGCTATCTTATTTCAATATTCATGATCCAAGTATTTG
GCAGCAGTTTTCCTTTTGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTLAELIAHYSNAHVERI
SAVTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
LIKRLSQDEIVHIITQALTDPERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGGSFTTEMLVQVAGHQ
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPNAMTVALNAWDCFHRV
GPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETGQEAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGEN
YFPESLQESQFYFPTERGFEKRIKDKLAQLAQLDQASGRKRYE

Sequences:

>Translated_443_residues
MSSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTLAELIAHYSNAHVERI
SAVTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
LIKRLSQDEIVHIITQALTDPERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGGSFTTEMLVQVAGHQ
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPNAMTVALNAWDCFHRV
GPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETGQEAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGEN
YFPESLQESQFYFPTERGFEKRIKDKLAQLAQLDQASGRKRYE
>Mature_442_residues
SSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGTGKTTLAELIAHYSNAHVERIS
AVTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYL
IKRLSQDEIVHIITQALTDPERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGGSFTTEMLVQVAGHQV
AGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPNAMTVALNAWDCFHRVG
PAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETGQEAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENY
FPESLQESQFYFPTERGFEKRIKDKLAQLAQLDQASGRKRYE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=41.8181818181818, Blast_Score=322, Evalue=3e-88,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=37.9545454545455, Blast_Score=270, Evalue=2e-72,
Organism=Escherichia coli, GI1787119, Length=449, Percent_Identity=67.7060133630289, Blast_Score=612, Evalue=1e-176,
Organism=Escherichia coli, GI1786676, Length=276, Percent_Identity=27.1739130434783, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=428, Percent_Identity=37.3831775700935, Blast_Score=299, Evalue=6e-82,
Organism=Saccharomyces cerevisiae, GI6324039, Length=224, Percent_Identity=25.8928571428571, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48810; Mature: 48679

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGT
CCCCCCCCCCCCHHHHHHCCHHHHHHHCCCHHCCCCCHHHHHHHHCCCCCEEEEECCCCC
GKTTLAELIAHYSNAHVERISAVTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALTD
CCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
PERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGGSFTTEMLVQVAGHQ
HHHCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVG
EECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
NADPNAMTVALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETG
CCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
QEAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENYFPESLQESQFYFPTERGFE
CCCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHH
KRIKDKLAQLAQLDQASGRKRYE
HHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPGT
CCCCCCCCCCCHHHHHHCCHHHHHHHCCCHHCCCCCHHHHHHHHCCCCCEEEEECCCCC
GKTTLAELIAHYSNAHVERISAVTSGVKDIRAAIEQAQAVAQSRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALTD
CCCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
PERGLGQRQLVMPTDVLNKLAQLCDGDARKALNLLELMSDMVADGGSFTTEMLVQVAGHQ
HHHCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVG
EECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
NADPNAMTVALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETG
CCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
QEAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENYFPESLQESQFYFPTERGFE
CCCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHH
KRIKDKLAQLAQLDQASGRKRYE
HHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]