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The map label for this gene is infC [H]

Identifier: 117920488

GI number: 117920488

Start: 2453312

End: 2453743

Strand: Direct

Name: infC [H]

Synonym: Shewana3_2044

Alternate gene names: 117920488

Gene position: 2453312-2453743 (Clockwise)

Preceding gene: 117920487

Following gene: 117920489

Centisome position: 49.34

GC content: 43.75

Gene sequence:

>432_bases
GTGGTGAGCATCAGAGATGCTCAGAATTTGGCAGATGAAGCGGGTGTAGACCTAGTCGAAATTAGTCCAAACGCTGAACC
TCCAGTATGTCGCATTATGGACTACGGTAAGTTCCTATTTGATAAAGCGAAAGCTCAAAAGGAACAAAAGAAGAAGCAAA
AACAGGTTCAGGTTAAGGAAATCAAATTCCGTCCTGGAACTGACGAAAACGACTATCAGGTAAAACTACGCAACCTGATA
CGTTTTCTGGAAGACGGGGACAAAGCGAAAATTACGCTGCGTTTCCGAGGCCGCGAAATGGCTCACCAAAACCTAGGTAT
GGATCTATTGAACCGTATCAAAACAGATTTGGATGAGTATGCAATTGTTGAATCCTTCCCGAAAATGGAAGGCCGACAAG
CCATTATGGTGCTCGCGCCTAAAAAGAAATAA

Upstream 100 bases:

>100_bases
GAAAACAGCAGGGCGTCAGCTGGCCCCTAATAGAATCAATGAAGAAATCACAGGTGTACCAGAAGTACGCTTAACCGGCA
TTGATGGTGAAGCTATTGGT

Downstream 100 bases:

>100_bases
GTAGGGCAACCTATAAAAGTAGCGAAGGCTATATGCCTTCGCTCGCCTTGCTTTTTATTTAACATCCCAATGCGGAGTTT
TAGTAATGCCTAAAATGAAA

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKEIKFRPGTDENDYQVKLRNLI
RFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKTDLDEYAIVESFPKMEGRQAIMVLAPKKK

Sequences:

>Translated_143_residues
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKEIKFRPGTDENDYQVKLRNLI
RFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKTDLDEYAIVESFPKMEGRQAIMVLAPKKK
>Mature_143_residues
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKEIKFRPGTDENDYQVKLRNLI
RFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKTDLDEYAIVESFPKMEGRQAIMVLAPKKK

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=144, Percent_Identity=79.8611111111111, Blast_Score=216, Evalue=6e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 16523; Mature: 16523

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKE
CCCCCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKFRPGTDENDYQVKLRNLIRFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKTDLDEY
EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHH
AIVESFPKMEGRQAIMVLAPKKK
HHHHHCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MVSIRDAQNLADEAGVDLVEISPNAEPPVCRIMDYGKFLFDKAKAQKEQKKKQKQVQVKE
CCCCCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IKFRPGTDENDYQVKLRNLIRFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKTDLDEY
EEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHHH
AIVESFPKMEGRQAIMVLAPKKK
HHHHHCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA