| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is hsdM [H]
Identifier: 117920472
GI number: 117920472
Start: 2424267
End: 2425808
Strand: Direct
Name: hsdM [H]
Synonym: Shewana3_2027
Alternate gene names: 117920472
Gene position: 2424267-2425808 (Clockwise)
Preceding gene: 117920471
Following gene: 117920473
Centisome position: 48.76
GC content: 49.81
Gene sequence:
>1542_bases ATGATCACTGGTAAATTAAAAAGCGATATCAACAAGCTATGGGAAGAGTTCTGGACGGGCGGTATCGCCAACCCCTTAAC TGTGATTGAGCAAATCACCTTTTTGATGTACGCCCGATTGTTGGACTTGCACGAGCAGCGTGACGAAAAACGCGCCAAAC TGCGCGGCATTGATTTTAAACGTCGCTTTAACGACAACCAGCAGCATATCCGCTGGCATCGTTTTATTCACCAAGACAAA GACACCATGCTGAAGCTGGTGCGCGACGAAGTGTTCCCGCATTTTAAAAATGCCTCAGGTGAAGGCTCGTTATTTGGCGA ATTTATGAAAGACGCCCAGTGCATGATCCAAAAGCCAACGCTGATGGAATCGGCCGTTGAGATGATTGATAAGCTGCCAC TGGAAGACAGCGACACCAAAGGTGACTTATACGAGTACCTGCTAAGCAAACTCACCACCGCTGGCATTAACGGCCAGTTC CGCACCCCGCGCCATATTATCCGCGCTATGGTGGAAATGCTCGACCCCACAGTCGAAGACCGTATTGTCGACCCAAGCTG CGGCACCGCTGGCTTTCTAACGGTGGCTTACGAATATTTACTGGAAAAATACACCTCGCCCGAAGGCGTGCATACCGAAA CTGTGGTGGGCGACAACGGCGAAGCGCAGCAAGTCAAAATCTATAGCGGCGACTTATTGGTCGAACACCGCGATTACGTC AACACCGACATGTTCCACGGCTTTGACTTCGACGCCACCATGCTACGCATTGCCGCCATGAACCTAGTGATGCATGGGGT GACTGAACCTGACGTGCATTATCAGGACACCTTAAGTGGCAGCTTTACCGAGCGTTTCCCAAATCAAAGTAAAGACGCTT ACACCCTATGTATCGCCAACCCGCCGTTTAAAGGCTCGCTTGATGAAGAAGACGTCGACCCAGCCATTTTGCGCATGGTG AAAACCAAAAAGACAGAGCTGTTGTTTGTCGCGCAAATACTGAGGCTGCTGAAAAACGGCGGTAAAACCGCCATTATCGT GCCAGATGGCGTGTTGTTTGGCTCATCCAACGCACACCAGCAACTACGCCAGCACATTATTGAAAACAACGAGTTGCAAG CGGTGGTGTCTTTACCATCCGGTGTATTTAAACCCTACGCCGGTGTGTCGACCGCGATTTTATTTATCACCAAAGGCTCA CGCACCGACCACGTTTGGTTTTATGACGTGCAGGCCGATGGCATGAGTCTGGATGACAAACGCACGCCAATCAAAGACAA CGACTTACCGGACTTAGTCGCCAAGTTTAAAGCGCGCGATAAAGCCATTGCCGAAACCGAGCAGAACGATCGCAGCCAAA AAGCCTTTTGGGTCAGCAAAGCAGATATCGTTGGCAATAAATACGACCTGTCGATTAACCGCTACAAACAAGTGGTGTAT GCCGAGCAGCAGTATGACGACCCGAAAGTGATCCTTAGTAAATTAGTGGCGCTGGAAAACGATATTCTGGCGGATTTAAA AGCGTTGGAGGATATGCTGTGA
Upstream 100 bases:
>100_bases AGACGACGTCTTTTCGTTGTTAAGGTCATTAGAGCTGCCAATACCATTAACCAAAGCCGAAATGACGGCAAAAAATTAAG TCATAATAACCGAGAATTGC
Downstream 100 bases:
>100_bases GTTGGCCGATGGTAAAGTTGGGCGATATTTTTGATATAGCTAGGGGAGGATCGCCTCGCCCTATCGACGACTATATAACC GATGCCGATGACGGGTTAAA
Product: N-6 DNA methylase
Products: NA
Alternate protein names: M.EcoEI [H]
Number of amino acids: Translated: 513; Mature: 513
Protein sequence:
>513_residues MITGKLKSDINKLWEEFWTGGIANPLTVIEQITFLMYARLLDLHEQRDEKRAKLRGIDFKRRFNDNQQHIRWHRFIHQDK DTMLKLVRDEVFPHFKNASGEGSLFGEFMKDAQCMIQKPTLMESAVEMIDKLPLEDSDTKGDLYEYLLSKLTTAGINGQF RTPRHIIRAMVEMLDPTVEDRIVDPSCGTAGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKIYSGDLLVEHRDYV NTDMFHGFDFDATMLRIAAMNLVMHGVTEPDVHYQDTLSGSFTERFPNQSKDAYTLCIANPPFKGSLDEEDVDPAILRMV KTKKTELLFVAQILRLLKNGGKTAIIVPDGVLFGSSNAHQQLRQHIIENNELQAVVSLPSGVFKPYAGVSTAILFITKGS RTDHVWFYDVQADGMSLDDKRTPIKDNDLPDLVAKFKARDKAIAETEQNDRSQKAFWVSKADIVGNKYDLSINRYKQVVY AEQQYDDPKVILSKLVALENDILADLKALEDML
Sequences:
>Translated_513_residues MITGKLKSDINKLWEEFWTGGIANPLTVIEQITFLMYARLLDLHEQRDEKRAKLRGIDFKRRFNDNQQHIRWHRFIHQDK DTMLKLVRDEVFPHFKNASGEGSLFGEFMKDAQCMIQKPTLMESAVEMIDKLPLEDSDTKGDLYEYLLSKLTTAGINGQF RTPRHIIRAMVEMLDPTVEDRIVDPSCGTAGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKIYSGDLLVEHRDYV NTDMFHGFDFDATMLRIAAMNLVMHGVTEPDVHYQDTLSGSFTERFPNQSKDAYTLCIANPPFKGSLDEEDVDPAILRMV KTKKTELLFVAQILRLLKNGGKTAIIVPDGVLFGSSNAHQQLRQHIIENNELQAVVSLPSGVFKPYAGVSTAILFITKGS RTDHVWFYDVQADGMSLDDKRTPIKDNDLPDLVAKFKARDKAIAETEQNDRSQKAFWVSKADIVGNKYDLSINRYKQVVY AEQQYDDPKVILSKLVALENDILADLKALEDML >Mature_513_residues MITGKLKSDINKLWEEFWTGGIANPLTVIEQITFLMYARLLDLHEQRDEKRAKLRGIDFKRRFNDNQQHIRWHRFIHQDK DTMLKLVRDEVFPHFKNASGEGSLFGEFMKDAQCMIQKPTLMESAVEMIDKLPLEDSDTKGDLYEYLLSKLTTAGINGQF RTPRHIIRAMVEMLDPTVEDRIVDPSCGTAGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKIYSGDLLVEHRDYV NTDMFHGFDFDATMLRIAAMNLVMHGVTEPDVHYQDTLSGSFTERFPNQSKDAYTLCIANPPFKGSLDEEDVDPAILRMV KTKKTELLFVAQILRLLKNGGKTAIIVPDGVLFGSSNAHQQLRQHIIENNELQAVVSLPSGVFKPYAGVSTAILFITKGS RTDHVWFYDVQADGMSLDDKRTPIKDNDLPDLVAKFKARDKAIAETEQNDRSQKAFWVSKADIVGNKYDLSINRYKQVVY AEQQYDDPKVILSKLVALENDILADLKALEDML
Specific function: The M and S subunits together form a methyltransferase (MTase) that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=385, Percent_Identity=27.012987012987, Blast_Score=115, Evalue=5e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 58355; Mature: 58355
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITGKLKSDINKLWEEFWTGGIANPLTVIEQITFLMYARLLDLHEQRDEKRAKLRGIDFK CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH RRFNDNQQHIRWHRFIHQDKDTMLKLVRDEVFPHFKNASGEGSLFGEFMKDAQCMIQKPT HHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCH LMESAVEMIDKLPLEDSDTKGDLYEYLLSKLTTAGINGQFRTPRHIIRAMVEMLDPTVED HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHH RIVDPSCGTAGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKIYSGDLLVEHRDYV CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCEEEECCCCC NTDMFHGFDFDATMLRIAAMNLVMHGVTEPDVHYQDTLSGSFTERFPNQSKDAYTLCIAN CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHCCCCCCCCEEEEEEC PPFKGSLDEEDVDPAILRMVKTKKTELLFVAQILRLLKNGGKTAIIVPDGVLFGSSNAHQ CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCHHH QLRQHIIENNELQAVVSLPSGVFKPYAGVSTAILFITKGSRTDHVWFYDVQADGMSLDDK HHHHHHHCCCCEEEEEECCCHHCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCC RTPIKDNDLPDLVAKFKARDKAIAETEQNDRSQKAFWVSKADIVGNKYDLSINRYKQVVY CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEHHHHCCCEEECCHHHHHHHHH AEQQYDDPKVILSKLVALENDILADLKALEDML HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MITGKLKSDINKLWEEFWTGGIANPLTVIEQITFLMYARLLDLHEQRDEKRAKLRGIDFK CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH RRFNDNQQHIRWHRFIHQDKDTMLKLVRDEVFPHFKNASGEGSLFGEFMKDAQCMIQKPT HHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCH LMESAVEMIDKLPLEDSDTKGDLYEYLLSKLTTAGINGQFRTPRHIIRAMVEMLDPTVED HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHH RIVDPSCGTAGFLTVAYEYLLEKYTSPEGVHTETVVGDNGEAQQVKIYSGDLLVEHRDYV CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCEEEECCCCC NTDMFHGFDFDATMLRIAAMNLVMHGVTEPDVHYQDTLSGSFTERFPNQSKDAYTLCIAN CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHCCCCCCCCEEEEEEC PPFKGSLDEEDVDPAILRMVKTKKTELLFVAQILRLLKNGGKTAIIVPDGVLFGSSNAHQ CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEECCCCHHH QLRQHIIENNELQAVVSLPSGVFKPYAGVSTAILFITKGSRTDHVWFYDVQADGMSLDDK HHHHHHHCCCCEEEEEECCCHHCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCC RTPIKDNDLPDLVAKFKARDKAIAETEQNDRSQKAFWVSKADIVGNKYDLSINRYKQVVY CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEHHHHCCCEEECCHHHHHHHHH AEQQYDDPKVILSKLVALENDILADLKALEDML HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]