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The map label for this gene is intR [H]

Identifier: 117920467

GI number: 117920467

Start: 2417021

End: 2418244

Strand: Reverse

Name: intR [H]

Synonym: Shewana3_2022

Alternate gene names: 117920467

Gene position: 2418244-2417021 (Counterclockwise)

Preceding gene: 117920468

Following gene: 117920466

Centisome position: 48.64

GC content: 37.58

Gene sequence:

>1224_bases
ATGGGTAACATTAGAGCGCGCGATGGCAAACTATTTTTCGATTTCACTTACGAAGGGATCAGATGTCGAGAGCAAACGGT
TTTGATTGATAATCGATTAAACCGATCAAAATTGACCAATATTTTGAATACTATCGAAGCTGAAATTCGACTGAATCGAT
TTGTGTTTAAGTCCTATTTTCCTTCGAGCTCAAGATGTAGCCAATTTTCAGAATATGACATCAGAGTGCAACAGCATTTG
GCTGAAAATGTTGAACCTTTGACTGTAAATATTATGTCAAATATTCCTACATTCGAAGAGTTTGTCGGCGAATGGGTTGT
AGAAAACAAGATTCAATGGAAAAAGAGTCATTGTAAGAACATACAGATGATCATTGAATGTTACTTATTACCTGCATTTG
GTCATATTAGATTAAATGAAATCACAAGGCCAAGTTTGATTAAGTTTAGAGCTTCTATTGCTGACTCTAGACGTACAGGC
ACTACAGAAAAACTAAGTAACGACTGGATTAATCATGTAATGACGCCACTACGAGGGATCTTAAATGAAGCAGCATTACG
ATTTGACTTCCCTACCCCGTTTGTCAATATCAAGCCTTTAAGAATCGATAAGACGGTCATAGAACCCTTTTCTCTAGCGG
AAGTTCAATATTTTTTAGAGCACATTCGAGATGATTTTAGAAATTATTATACCGTTAGATTTTTCACTGCCATGCGAACA
GCAGAAATCGATGGATTAAAATGGCAATTTGTTAATTTAGATCGTTATGAAATCTTAATCCAAGAAACACTTGTTGACGG
TTACGTTGAAACCCCTAAAACATCAGCCTCTTATCGTAGTATTCAATTATCACAACCTGTAGTTGATGCATTAAAAAGAC
AGCGAAAAGTAACTGGCAATAAGACTTATGTATTTTGTAATGCGAGTGGCAACCCATTAGAGCACCGAAATGTAACGAAA
CGAATTTGGTACCCAGCTTTAGACGAAATGTGCTTAAAAAGAAGACGCCCATACCAAACAAGGCACACTTGCGCAACGTT
ATGGCTTGCAGCAGGTGAAAACCCTGAATGGATAGCCAAACAAATGGGACACAGCACAACAAAAATGTTGTTTGAAGTTT
ATAGCCGTTATGTTCCAAACGCGACTAGGCAAGACGGTAGTGCATTCGATCGACTCATTCAGCATGTTAATTTTGACTTT
AACCGGGAGAGTTCAGATGAGTAA

Upstream 100 bases:

>100_bases
AGAAAAATTTTTTACATTTGGGAAGAAATAGAGATTGAGCTCTTTAGAAAAGCAGAACGGAGCAAAATCGTTGTACCAAT
GGCACGCCGAGGTGTTTGCC

Downstream 100 bases:

>100_bases
GCCAATATTCGTGTGGATGAAAAGCATTAAGTTTAGTGCAAATCTCCCTACTGCAAATTGTGAGTTTATTGCATCTAATA
ACCTAGTTAGTGCAATAACA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MGNIRARDGKLFFDFTYEGIRCREQTVLIDNRLNRSKLTNILNTIEAEIRLNRFVFKSYFPSSSRCSQFSEYDIRVQQHL
AENVEPLTVNIMSNIPTFEEFVGEWVVENKIQWKKSHCKNIQMIIECYLLPAFGHIRLNEITRPSLIKFRASIADSRRTG
TTEKLSNDWINHVMTPLRGILNEAALRFDFPTPFVNIKPLRIDKTVIEPFSLAEVQYFLEHIRDDFRNYYTVRFFTAMRT
AEIDGLKWQFVNLDRYEILIQETLVDGYVETPKTSASYRSIQLSQPVVDALKRQRKVTGNKTYVFCNASGNPLEHRNVTK
RIWYPALDEMCLKRRRPYQTRHTCATLWLAAGENPEWIAKQMGHSTTKMLFEVYSRYVPNATRQDGSAFDRLIQHVNFDF
NRESSDE

Sequences:

>Translated_407_residues
MGNIRARDGKLFFDFTYEGIRCREQTVLIDNRLNRSKLTNILNTIEAEIRLNRFVFKSYFPSSSRCSQFSEYDIRVQQHL
AENVEPLTVNIMSNIPTFEEFVGEWVVENKIQWKKSHCKNIQMIIECYLLPAFGHIRLNEITRPSLIKFRASIADSRRTG
TTEKLSNDWINHVMTPLRGILNEAALRFDFPTPFVNIKPLRIDKTVIEPFSLAEVQYFLEHIRDDFRNYYTVRFFTAMRT
AEIDGLKWQFVNLDRYEILIQETLVDGYVETPKTSASYRSIQLSQPVVDALKRQRKVTGNKTYVFCNASGNPLEHRNVTK
RIWYPALDEMCLKRRRPYQTRHTCATLWLAAGENPEWIAKQMGHSTTKMLFEVYSRYVPNATRQDGSAFDRLIQHVNFDF
NRESSDE
>Mature_406_residues
GNIRARDGKLFFDFTYEGIRCREQTVLIDNRLNRSKLTNILNTIEAEIRLNRFVFKSYFPSSSRCSQFSEYDIRVQQHLA
ENVEPLTVNIMSNIPTFEEFVGEWVVENKIQWKKSHCKNIQMIIECYLLPAFGHIRLNEITRPSLIKFRASIADSRRTGT
TEKLSNDWINHVMTPLRGILNEAALRFDFPTPFVNIKPLRIDKTVIEPFSLAEVQYFLEHIRDDFRNYYTVRFFTAMRTA
EIDGLKWQFVNLDRYEILIQETLVDGYVETPKTSASYRSIQLSQPVVDALKRQRKVTGNKTYVFCNASGNPLEHRNVTKR
IWYPALDEMCLKRRRPYQTRHTCATLWLAAGENPEWIAKQMGHSTTKMLFEVYSRYVPNATRQDGSAFDRLIQHVNFDFN
RESSDE

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=415, Percent_Identity=27.2289156626506, Blast_Score=124, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47847; Mature: 47716

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNIRARDGKLFFDFTYEGIRCREQTVLIDNRLNRSKLTNILNTIEAEIRLNRFVFKSYF
CCCCCCCCCEEEEEEECCCEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PSSSRCSQFSEYDIRVQQHLAENVEPLTVNIMSNIPTFEEFVGEWVVENKIQWKKSHCKN
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHH
IQMIIECYLLPAFGHIRLNEITRPSLIKFRASIADSRRTGTTEKLSNDWINHVMTPLRGI
HHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LNEAALRFDFPTPFVNIKPLRIDKTVIEPFSLAEVQYFLEHIRDDFRNYYTVRFFTAMRT
HHHHHEEEECCCCCEEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHH
AEIDGLKWQFVNLDRYEILIQETLVDGYVETPKTSASYRSIQLSQPVVDALKRQRKVTGN
HCCCCCEEEEECCCHHHHHHHHHHHHCHHCCCCCCCCCCEEECCHHHHHHHHHHHHCCCC
KTYVFCNASGNPLEHRNVTKRIWYPALDEMCLKRRRPYQTRHTCATLWLAAGENPEWIAK
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEECCCCHHHHHH
QMGHSTTKMLFEVYSRYVPNATRQDGSAFDRLIQHVNFDFNRESSDE
HHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
GNIRARDGKLFFDFTYEGIRCREQTVLIDNRLNRSKLTNILNTIEAEIRLNRFVFKSYF
CCCCCCCCEEEEEEECCCEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PSSSRCSQFSEYDIRVQQHLAENVEPLTVNIMSNIPTFEEFVGEWVVENKIQWKKSHCKN
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHH
IQMIIECYLLPAFGHIRLNEITRPSLIKFRASIADSRRTGTTEKLSNDWINHVMTPLRGI
HHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
LNEAALRFDFPTPFVNIKPLRIDKTVIEPFSLAEVQYFLEHIRDDFRNYYTVRFFTAMRT
HHHHHEEEECCCCCEEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHH
AEIDGLKWQFVNLDRYEILIQETLVDGYVETPKTSASYRSIQLSQPVVDALKRQRKVTGN
HCCCCCEEEEECCCHHHHHHHHHHHHCHHCCCCCCCCCCEEECCHHHHHHHHHHHHCCCC
KTYVFCNASGNPLEHRNVTKRIWYPALDEMCLKRRRPYQTRHTCATLWLAAGENPEWIAK
EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEECCCCHHHHHH
QMGHSTTKMLFEVYSRYVPNATRQDGSAFDRLIQHVNFDFNRESSDE
HHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]