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The map label for this gene is xerD [H]

Identifier: 117920441

GI number: 117920441

Start: 2380138

End: 2381247

Strand: Reverse

Name: xerD [H]

Synonym: Shewana3_1996

Alternate gene names: 117920441

Gene position: 2381247-2380138 (Counterclockwise)

Preceding gene: 117920445

Following gene: 117920440

Centisome position: 47.89

GC content: 43.96

Gene sequence:

>1110_bases
ATGTCTAAATCGATTATCCATTATTCCACAGGTGGAAGTGCTCCTAGCCGTTCCTCTGACATGGCATCGAATATCACAGC
AAGCGATAAACAAATAGATTCGCCATTTTTTGAGGAAAGCTCACTGCCCCAATCGGTTCACAGTGATTTTTTTAACGCGG
CCGCCGAAACAGAATACGAAATCTCCATCAATACCCGTCGGGTTTATCGGACCAGCTTTGGCCTATTTGAGCAATATTGC
GCGACGCATCAGCTGCAGTCCTTACCCGCCGATCCGCGCAGTATTATTTCTTTTATCGGTCATCAAAAAGAATTGCTCCA
AGCAAGCAGTGGGACTCAGCTTTCAAAGCAAACCTTAACGACTCGGCTAGCCGCGATCCGTTACTATCATATCCAAGCAG
GATTTCCATCCCCCACCGAACACCCACTGGTGATCCGTGTGATGCGCGGCCTGAGTCGTAATCACCATAGGCAAGTCCAA
GATTATGATCAGCAACCAATCATGTACGATGAGGTCGAGCTATTGATCCAAGCAATAGAGCAACAACCCCATCCACTGCT
GCGCTCAAGGGATAAGGCCATTATTCAACTTGGACTACAAGGCGGATTTCGCCGCTCAGAATTGGCCAATTTAAAAGTAC
AATATTTAAGTTTTATGCGGGATAAATTGAAAGTACGGCTGCCTTTTTCGAAAAGCAATCAGCAGGGATTAAGGGAATGG
AAGAATTTACCCGACTCGGAACCCTTTGCCGCCTATAATGCCGTCAAGGACTGGTTAAATGAAAGTAAAATTACCGAAGG
TCATTTATTTCGCTCAATTTCTCGAGATGGAAAAACCTTAAGGCCTTATCAAATCAGTGATAATGTCACATCTAAATCAT
CACTCATTCGAAATAGTGGATTTTTAAACGGTGACGATATTTATCGGATCATTAAGCAATATTGTCTAAAGGCAGGTTTA
CCAGCGCAATATTATGGCGCCCACAGTTTGCGCAGTGGATGCGTTACACAACTACATGAAAACAATAAAGATACCTTGTA
CATCATGGCAAGAACAGGACATACGGATCCACGCTCATTACGCCATTACCTCAAGCCAAAAGAAGATTAA

Upstream 100 bases:

>100_bases
CAAACAACAGCACTACCAGTGATAATGACGATTATCACTGGTAGATAAAGGCTGGTTTTACGTATAATTGCGCCAGTTTT
ATCGGCCGTAAAATACTCCC

Downstream 100 bases:

>100_bases
CCACAGCATTAGCACTTAATTAATAACACTGTTTTTAATATTTATGTTAAGAATAATTTTATTTTTAAGATATTTTTAAT
AAAAAATAAAATTTATTATA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MSKSIIHYSTGGSAPSRSSDMASNITASDKQIDSPFFEESSLPQSVHSDFFNAAAETEYEISINTRRVYRTSFGLFEQYC
ATHQLQSLPADPRSIISFIGHQKELLQASSGTQLSKQTLTTRLAAIRYYHIQAGFPSPTEHPLVIRVMRGLSRNHHRQVQ
DYDQQPIMYDEVELLIQAIEQQPHPLLRSRDKAIIQLGLQGGFRRSELANLKVQYLSFMRDKLKVRLPFSKSNQQGLREW
KNLPDSEPFAAYNAVKDWLNESKITEGHLFRSISRDGKTLRPYQISDNVTSKSSLIRNSGFLNGDDIYRIIKQYCLKAGL
PAQYYGAHSLRSGCVTQLHENNKDTLYIMARTGHTDPRSLRHYLKPKED

Sequences:

>Translated_369_residues
MSKSIIHYSTGGSAPSRSSDMASNITASDKQIDSPFFEESSLPQSVHSDFFNAAAETEYEISINTRRVYRTSFGLFEQYC
ATHQLQSLPADPRSIISFIGHQKELLQASSGTQLSKQTLTTRLAAIRYYHIQAGFPSPTEHPLVIRVMRGLSRNHHRQVQ
DYDQQPIMYDEVELLIQAIEQQPHPLLRSRDKAIIQLGLQGGFRRSELANLKVQYLSFMRDKLKVRLPFSKSNQQGLREW
KNLPDSEPFAAYNAVKDWLNESKITEGHLFRSISRDGKTLRPYQISDNVTSKSSLIRNSGFLNGDDIYRIIKQYCLKAGL
PAQYYGAHSLRSGCVTQLHENNKDTLYIMARTGHTDPRSLRHYLKPKED
>Mature_368_residues
SKSIIHYSTGGSAPSRSSDMASNITASDKQIDSPFFEESSLPQSVHSDFFNAAAETEYEISINTRRVYRTSFGLFEQYCA
THQLQSLPADPRSIISFIGHQKELLQASSGTQLSKQTLTTRLAAIRYYHIQAGFPSPTEHPLVIRVMRGLSRNHHRQVQD
YDQQPIMYDEVELLIQAIEQQPHPLLRSRDKAIIQLGLQGGFRRSELANLKVQYLSFMRDKLKVRLPFSKSNQQGLREWK
NLPDSEPFAAYNAVKDWLNESKITEGHLFRSISRDGKTLRPYQISDNVTSKSSLIRNSGFLNGDDIYRIIKQYCLKAGLP
AQYYGAHSLRSGCVTQLHENNKDTLYIMARTGHTDPRSLRHYLKPKED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42113; Mature: 41982

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSIIHYSTGGSAPSRSSDMASNITASDKQIDSPFFEESSLPQSVHSDFFNAAAETEYE
CCCCEEEEECCCCCCCCCHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
ISINTRRVYRTSFGLFEQYCATHQLQSLPADPRSIISFIGHQKELLQASSGTQLSKQTLT
EEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCHHHHHHHH
TRLAAIRYYHIQAGFPSPTEHPLVIRVMRGLSRNHHRQVQDYDQQPIMYDEVELLIQAIE
HHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QQPHPLLRSRDKAIIQLGLQGGFRRSELANLKVQYLSFMRDKLKVRLPFSKSNQQGLREW
HCCCHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHH
KNLPDSEPFAAYNAVKDWLNESKITEGHLFRSISRDGKTLRPYQISDNVTSKSSLIRNSG
HCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCEECCCCCCHHHHHHHHCC
FLNGDDIYRIIKQYCLKAGLPAQYYGAHSLRSGCVTQLHENNKDTLYIMARTGHTDPRSL
CCCHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHH
RHYLKPKED
HHHCCCCCC
>Mature Secondary Structure 
SKSIIHYSTGGSAPSRSSDMASNITASDKQIDSPFFEESSLPQSVHSDFFNAAAETEYE
CCCEEEEECCCCCCCCCHHHHHCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEE
ISINTRRVYRTSFGLFEQYCATHQLQSLPADPRSIISFIGHQKELLQASSGTQLSKQTLT
EEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCHHHHHHHH
TRLAAIRYYHIQAGFPSPTEHPLVIRVMRGLSRNHHRQVQDYDQQPIMYDEVELLIQAIE
HHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QQPHPLLRSRDKAIIQLGLQGGFRRSELANLKVQYLSFMRDKLKVRLPFSKSNQQGLREW
HCCCHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHH
KNLPDSEPFAAYNAVKDWLNESKITEGHLFRSISRDGKTLRPYQISDNVTSKSSLIRNSG
HCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEECCEECCCCCCHHHHHHHHCC
FLNGDDIYRIIKQYCLKAGLPAQYYGAHSLRSGCVTQLHENNKDTLYIMARTGHTDPRSL
CCCHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHH
RHYLKPKED
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]