| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is btuB [H]
Identifier: 117920359
GI number: 117920359
Start: 2270695
End: 2273367
Strand: Reverse
Name: btuB [H]
Synonym: Shewana3_1914
Alternate gene names: 117920359
Gene position: 2273367-2270695 (Counterclockwise)
Preceding gene: 117920367
Following gene: 117920358
Centisome position: 45.72
GC content: 49.64
Gene sequence:
>2673_bases ATGACTACGCAAACAACCGTGGCACGCGCGGTTCGTTTTAGTTTACTCGCTTTAGTATCAACATCCTTATCTCCGTTGGT ATTTGCCGCCGATGAAGCGGCCGTTATCGATGATAAAGTGGAGCGTATCGAAGTCACGGGTTCACGTATTAAACGTACCG ATCTTGAAAATGCCTCCCCTATCGTGGTGGTGAGCGCAGCAGATATCGAAAAAGGCGGCTTTAACTCAGTGCAAGACGTG TTAGGTAACCTGTCGCAAAACTCTGGTGGGTCTATGACCCAGCAGGAAGTGCACGGCTTTACTCCAGCGGCATCGGCCGT CAACCTGCGTGGTGTGGGCGCTGGCCGCGTACTGACATTAATCAATGGCAAACGTGTGCCTAAATATCCGTTTGGTGCTG GTGGTACAGACAGCTTTGTCGATACTGCCAACATTCCGCTAGGAGCCATTGAACGTATCGAGATTTTAACCACGGGCGCT TCGGCAATTTACGGCTCAGATGCGATGGGTGGTGTTATTAACATCATCTTGAAAAAAGACGTTGAGCAAAGCACCTTCAA ATACCGTCACTCCGATACCTTCGATGGTGGTCTGCAAAATAACCAGTTCTCCTTTATGACCGGTGTCAGCAGTGATAAAG CAAACCTGACCTTCTTCGCCGAATATGAAGATCGCCAAGCGTTAAAGGCCTCGGATCGTCCTGAATGGGGAACCGATATT GTTTCGGGTAACTACTATTCCAGTTACAGCTCCTATGGCGCCAACCTTGTGGATAGCAATGGTAAATTACTCAAGACCTT AAGCGCCGCAGAATGTGATGCGCGCGGCTATGTGATGATGGCCAATGGTAAGTGTGGGTTCGATCGCTCCGCACAGCGCG ACTTTTCGCCTGAGCAAAAACGCTATTCAACGATGATCAACCTCACCAAAAACTTAAACGACAATCATCAGCTGTATTCG CGCCTCGATTACACCCATGCCTCGACCTACACTGAGATTGAATCGGCAACGGTCGGCGAAGATTTTATGTTCAACGTGTC GGGCAATAACGTCACTATTGTTGATGAACTCAATGGGTTATCCCAAGTGTTCGATAAAAATACCGCCTTCGGCGGAGATT TTGCCGGCGCCGCCGATGGGGATTATTACTACACTCGCCGTATGTCTGAGTTAGGTCCGCGCACCTCTGATTTTGAGACA AACAATTTCTCCTTCTTATTAGGCAGCAAAGGTTACCTCACAGATTCAATCGAGTACGACACCTCATGGTCGATTGCACG CCAAACGGTGGAATCCACCACCGCAGGCTCGCCAACCTACCAAAGCATGTGGAACTACCTCACCGCGGGCACAAACGGCA ATTCGCTGCTGGATGTGATCTCGGCAGAAGATGCCGCATTGCTGGATTTCCAAGGTGGCAAGAAGGGGCAATCCACCCTA TCGAGCTTCAATGCAGGGATCAGTGGCGATGCCTTTGAATTACCAGCAGGCACAGTGGCTTATGCTGTGGGCGTCGAATA CGGTAAAGAATGGTTCTACGATAAGTCCGATAGCTTCACTAGCAATGGTGGCGTGATTGGTAAAGGCGGCAGCAGCGCCC AAGGTGAGCGTGAGCAATATGCAGGTTATGCCGAAGTCGCCGTGCCTGTGATCGAAAACCTCACCGTCACCCTTGCGGGC CGTTACGACTACTATGACGATTTATCTGATGTAGGCGGTCAGTTCAGCCCACAGGTCGCGGTCGAGTATCGCCCGATTGA TAACCTGTTGTTACGCGGTCTGTATGCCGAAACCTTCCGTGCACCGGATATGCAGCGCTTATTTGGTGAGCCAACGGCAG CCTATAGCACAGTGATCGATACTCCAACCTGTGAAGCCGCAGGTGGCACGGGCCCAGCCTGTGAGAAGATTGACTCACTG CCAATTACTATCGGTGCCAACCCAGAGCTGGAAGCGGAAACCGGCAAAAACTATAACCTAGGCATGGTGTGGGATTATAA CGATCTCAATTTAACCTTGGACTACTGGATTGTTGAAATCGACAACCTAGTGAACAGTCCAAGCGCCCAATATATCTTGG ATCACTCGGACGCCTTCGCCGATAAGATTTTCCGCGATGCCAGCGGCAAGTTAATTCAAGTGAATACTCAAGCCATTAAC ATGTCATCCCAAGAAACCTCGGGTATCGACTTCTCGGTGGGCTATCGCTATGAAACGTCAGGCTACGGCGATTTATCCGC ACGGTTAGAGGGCACCTATTTGCTGAAATGGGAAGAACAATTAACCCCAGATTCTGAGCCTTTAGATCTGATCGATGGTG ACGGCTCTGCCCCGCAAATCCGTGGTAACTTAAATCTGGGTTGGAACTTCGATAACTTCGCCACTAACCTGCTGATCAAG TACACAGATAGCATGAATGGCCAGCGTAAAGAGGCATTTATTAACAACGGTTTAGCGGACAAGTACGCCGTCACAATCGA CAGCCATGTCGAAGTGAACTGGGCCGCCAGCTATATGTTAACCGATGCGATTAAGTTCTCCGGTGGTATTAATAATATCT TCGATGCGGGCCCTGAAATTGACGAAACCCAAAACTCTTGGCCGCATTATCCACGTTCTTACTACAACGTTGTTGGGCGT GAATATTATTTAGCGGTAGAGATGAACTTCTAA
Upstream 100 bases:
>100_bases GTTAATGATAATTTTCCGGCTATGGAGGGCTGTTGCAAATAAATATAAGCCTTGATGAAAACCTTCCTGATCATCACGGC ATAACAAAGGGAATGAAAAT
Downstream 100 bases:
>100_bases TCAACCTCATGTTTTGATTAGCCTTGCTTCCTAAAACACAAAGCCGAGCTGTTGCTCGGCTTTTATCTATAGGCTTCACA CTCAGTTAGGCATAGGTATC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 890; Mature: 889
Protein sequence:
>890_residues MTTQTTVARAVRFSLLALVSTSLSPLVFAADEAAVIDDKVERIEVTGSRIKRTDLENASPIVVVSAADIEKGGFNSVQDV LGNLSQNSGGSMTQQEVHGFTPAASAVNLRGVGAGRVLTLINGKRVPKYPFGAGGTDSFVDTANIPLGAIERIEILTTGA SAIYGSDAMGGVINIILKKDVEQSTFKYRHSDTFDGGLQNNQFSFMTGVSSDKANLTFFAEYEDRQALKASDRPEWGTDI VSGNYYSSYSSYGANLVDSNGKLLKTLSAAECDARGYVMMANGKCGFDRSAQRDFSPEQKRYSTMINLTKNLNDNHQLYS RLDYTHASTYTEIESATVGEDFMFNVSGNNVTIVDELNGLSQVFDKNTAFGGDFAGAADGDYYYTRRMSELGPRTSDFET NNFSFLLGSKGYLTDSIEYDTSWSIARQTVESTTAGSPTYQSMWNYLTAGTNGNSLLDVISAEDAALLDFQGGKKGQSTL SSFNAGISGDAFELPAGTVAYAVGVEYGKEWFYDKSDSFTSNGGVIGKGGSSAQGEREQYAGYAEVAVPVIENLTVTLAG RYDYYDDLSDVGGQFSPQVAVEYRPIDNLLLRGLYAETFRAPDMQRLFGEPTAAYSTVIDTPTCEAAGGTGPACEKIDSL PITIGANPELEAETGKNYNLGMVWDYNDLNLTLDYWIVEIDNLVNSPSAQYILDHSDAFADKIFRDASGKLIQVNTQAIN MSSQETSGIDFSVGYRYETSGYGDLSARLEGTYLLKWEEQLTPDSEPLDLIDGDGSAPQIRGNLNLGWNFDNFATNLLIK YTDSMNGQRKEAFINNGLADKYAVTIDSHVEVNWAASYMLTDAIKFSGGINNIFDAGPEIDETQNSWPHYPRSYYNVVGR EYYLAVEMNF
Sequences:
>Translated_890_residues MTTQTTVARAVRFSLLALVSTSLSPLVFAADEAAVIDDKVERIEVTGSRIKRTDLENASPIVVVSAADIEKGGFNSVQDV LGNLSQNSGGSMTQQEVHGFTPAASAVNLRGVGAGRVLTLINGKRVPKYPFGAGGTDSFVDTANIPLGAIERIEILTTGA SAIYGSDAMGGVINIILKKDVEQSTFKYRHSDTFDGGLQNNQFSFMTGVSSDKANLTFFAEYEDRQALKASDRPEWGTDI VSGNYYSSYSSYGANLVDSNGKLLKTLSAAECDARGYVMMANGKCGFDRSAQRDFSPEQKRYSTMINLTKNLNDNHQLYS RLDYTHASTYTEIESATVGEDFMFNVSGNNVTIVDELNGLSQVFDKNTAFGGDFAGAADGDYYYTRRMSELGPRTSDFET NNFSFLLGSKGYLTDSIEYDTSWSIARQTVESTTAGSPTYQSMWNYLTAGTNGNSLLDVISAEDAALLDFQGGKKGQSTL SSFNAGISGDAFELPAGTVAYAVGVEYGKEWFYDKSDSFTSNGGVIGKGGSSAQGEREQYAGYAEVAVPVIENLTVTLAG RYDYYDDLSDVGGQFSPQVAVEYRPIDNLLLRGLYAETFRAPDMQRLFGEPTAAYSTVIDTPTCEAAGGTGPACEKIDSL PITIGANPELEAETGKNYNLGMVWDYNDLNLTLDYWIVEIDNLVNSPSAQYILDHSDAFADKIFRDASGKLIQVNTQAIN MSSQETSGIDFSVGYRYETSGYGDLSARLEGTYLLKWEEQLTPDSEPLDLIDGDGSAPQIRGNLNLGWNFDNFATNLLIK YTDSMNGQRKEAFINNGLADKYAVTIDSHVEVNWAASYMLTDAIKFSGGINNIFDAGPEIDETQNSWPHYPRSYYNVVGR EYYLAVEMNF >Mature_889_residues TTQTTVARAVRFSLLALVSTSLSPLVFAADEAAVIDDKVERIEVTGSRIKRTDLENASPIVVVSAADIEKGGFNSVQDVL GNLSQNSGGSMTQQEVHGFTPAASAVNLRGVGAGRVLTLINGKRVPKYPFGAGGTDSFVDTANIPLGAIERIEILTTGAS AIYGSDAMGGVINIILKKDVEQSTFKYRHSDTFDGGLQNNQFSFMTGVSSDKANLTFFAEYEDRQALKASDRPEWGTDIV SGNYYSSYSSYGANLVDSNGKLLKTLSAAECDARGYVMMANGKCGFDRSAQRDFSPEQKRYSTMINLTKNLNDNHQLYSR LDYTHASTYTEIESATVGEDFMFNVSGNNVTIVDELNGLSQVFDKNTAFGGDFAGAADGDYYYTRRMSELGPRTSDFETN NFSFLLGSKGYLTDSIEYDTSWSIARQTVESTTAGSPTYQSMWNYLTAGTNGNSLLDVISAEDAALLDFQGGKKGQSTLS SFNAGISGDAFELPAGTVAYAVGVEYGKEWFYDKSDSFTSNGGVIGKGGSSAQGEREQYAGYAEVAVPVIENLTVTLAGR YDYYDDLSDVGGQFSPQVAVEYRPIDNLLLRGLYAETFRAPDMQRLFGEPTAAYSTVIDTPTCEAAGGTGPACEKIDSLP ITIGANPELEAETGKNYNLGMVWDYNDLNLTLDYWIVEIDNLVNSPSAQYILDHSDAFADKIFRDASGKLIQVNTQAINM SSQETSGIDFSVGYRYETSGYGDLSARLEGTYLLKWEEQLTPDSEPLDLIDGDGSAPQIRGNLNLGWNFDNFATNLLIKY TDSMNGQRKEAFINNGLADKYAVTIDSHVEVNWAASYMLTDAIKFSGGINNIFDAGPEIDETQNSWPHYPRSYYNVVGRE YYLAVEMNF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=158, Percent_Identity=32.2784810126582, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1788478, Length=168, Percent_Identity=31.547619047619, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 96921; Mature: 96789
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTQTTVARAVRFSLLALVSTSLSPLVFAADEAAVIDDKVERIEVTGSRIKRTDLENASP CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCCHHEEEECCCHHEECCCCCCCC IVVVSAADIEKGGFNSVQDVLGNLSQNSGGSMTQQEVHGFTPAASAVNLRGVGAGRVLTL EEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCEEEEE INGKRVPKYPFGAGGTDSFVDTANIPLGAIERIEILTTGASAIYGSDAMGGVINIILKKD ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHEECCCCCCCCEEEEECCC VEQSTFKYRHSDTFDGGLQNNQFSFMTGVSSDKANLTFFAEYEDRQALKASDRPEWGTDI CCHHHHEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHCCCCCCCCCCEE VSGNYYSSYSSYGANLVDSNGKLLKTLSAAECDARGYVMMANGKCGFDRSAQRDFSPEQK ECCCCCCCHHHCCCEEECCCCCEEEEEHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHH RYSTMINLTKNLNDNHQLYSRLDYTHASTYTEIESATVGEDFMFNVSGNNVTIVDELNGL HHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHECCCCCCCCCEEEEECCCCEEEEECCCHH SQVFDKNTAFGGDFAGAADGDYYYTRRMSELGPRTSDFETNNFSFLLGSKGYLTDSIEYD HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEECCCCCC TSWSIARQTVESTTAGSPTYQSMWNYLTAGTNGNSLLDVISAEDAALLDFQGGKKGQSTL CCHHHHHHHHHHCCCCCCCHHHHHHHEECCCCCCCEEEEECCCCCEEEEECCCCCHHHHH SSFNAGISGDAFELPAGTVAYAVGVEYGKEWFYDKSDSFTSNGGVIGKGGSSAQGEREQY HHHCCCCCCCCEECCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCHHHH AGYAEVAVPVIENLTVTLAGRYDYYDDLSDVGGQFSPQVAVEYRPIDNLLLRGLYAETFR CCHHHHHHHHHCCEEEEEEECCCCHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHC APDMQRLFGEPTAAYSTVIDTPTCEAAGGTGPACEKIDSLPITIGANPELEAETGKNYNL CCCHHHHHCCCCHHHHEEECCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCE GMVWDYNDLNLTLDYWIVEIDNLVNSPSAQYILDHSDAFADKIFRDASGKLIQVNTQAIN EEEEECCCCEEEEEEEEEEEHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEEEE MSSQETSGIDFSVGYRYETSGYGDLSARLEGTYLLKWEEQLTPDSEPLDLIDGDGSAPQI CCCCCCCCCEEEEEEEEECCCCCCEEEEECCEEEEEEHHHCCCCCCCCEEECCCCCCCEE RGNLNLGWNFDNFATNLLIKYTDSMNGQRKEAFINNGLADKYAVTIDSHVEVNWAASYML EECEEECCCCHHHHEEEEEEEECCCCCCHHHHHHCCCCCCEEEEEEECCEEEEEEHHHHH TDAIKFSGGINNIFDAGPEIDETQNSWPHYPRSYYNVVGREYYLAVEMNF HHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECC >Mature Secondary Structure TTQTTVARAVRFSLLALVSTSLSPLVFAADEAAVIDDKVERIEVTGSRIKRTDLENASP CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCCHHEEEECCCHHEECCCCCCCC IVVVSAADIEKGGFNSVQDVLGNLSQNSGGSMTQQEVHGFTPAASAVNLRGVGAGRVLTL EEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCEEEECCCCCEEEEE INGKRVPKYPFGAGGTDSFVDTANIPLGAIERIEILTTGASAIYGSDAMGGVINIILKKD ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHEECCCCCCCCEEEEECCC VEQSTFKYRHSDTFDGGLQNNQFSFMTGVSSDKANLTFFAEYEDRQALKASDRPEWGTDI CCHHHHEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHCCCCCCCCCCEE VSGNYYSSYSSYGANLVDSNGKLLKTLSAAECDARGYVMMANGKCGFDRSAQRDFSPEQK ECCCCCCCHHHCCCEEECCCCCEEEEEHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHH RYSTMINLTKNLNDNHQLYSRLDYTHASTYTEIESATVGEDFMFNVSGNNVTIVDELNGL HHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHECCCCCCCCCEEEEECCCCEEEEECCCHH SQVFDKNTAFGGDFAGAADGDYYYTRRMSELGPRTSDFETNNFSFLLGSKGYLTDSIEYD HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCEECCCCCC TSWSIARQTVESTTAGSPTYQSMWNYLTAGTNGNSLLDVISAEDAALLDFQGGKKGQSTL CCHHHHHHHHHHCCCCCCCHHHHHHHEECCCCCCCEEEEECCCCCEEEEECCCCCHHHHH SSFNAGISGDAFELPAGTVAYAVGVEYGKEWFYDKSDSFTSNGGVIGKGGSSAQGEREQY HHHCCCCCCCCEECCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCHHHH AGYAEVAVPVIENLTVTLAGRYDYYDDLSDVGGQFSPQVAVEYRPIDNLLLRGLYAETFR CCHHHHHHHHHCCEEEEEEECCCCHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHC APDMQRLFGEPTAAYSTVIDTPTCEAAGGTGPACEKIDSLPITIGANPELEAETGKNYNL CCCHHHHHCCCCHHHHEEECCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCCCCE GMVWDYNDLNLTLDYWIVEIDNLVNSPSAQYILDHSDAFADKIFRDASGKLIQVNTQAIN EEEEECCCCEEEEEEEEEEEHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEEEE MSSQETSGIDFSVGYRYETSGYGDLSARLEGTYLLKWEEQLTPDSEPLDLIDGDGSAPQI CCCCCCCCCEEEEEEEEECCCCCCEEEEECCEEEEEEHHHCCCCCCCCEEECCCCCCCEE RGNLNLGWNFDNFATNLLIKYTDSMNGQRKEAFINNGLADKYAVTIDSHVEVNWAASYML EECEEECCCCHHHHEEEEEEEECCCCCCHHHHHHCCCCCCEEEEEEECCEEEEEEHHHHH TDAIKFSGGINNIFDAGPEIDETQNSWPHYPRSYYNVVGREYYLAVEMNF HHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA