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The map label for this gene is spsC [H]

Identifier: 117920353

GI number: 117920353

Start: 2264637

End: 2265824

Strand: Reverse

Name: spsC [H]

Synonym: Shewana3_1908

Alternate gene names: 117920353

Gene position: 2265824-2264637 (Counterclockwise)

Preceding gene: 117920354

Following gene: 117920352

Centisome position: 45.57

GC content: 47.14

Gene sequence:

>1188_bases
ATGCCCGGTTTTGAATTATTTGGTCCAGAAGAAAAGCAAGAAGTCGCCGATGTGATGGAGCACGGCTTTACCTTCCGTTA
TAACTTCGACCATATGCGTAATGATCGCTGGAAGACTCGCGATATGGAGCAACTGCTCTGCGAGAAAATGAATGTTAAGC
ATGCTCACCTCTTATCTAGCGGTACTGCTGCGCTGCAAACAGCCTTAATGGCGGCAGGCATTGGTGCTGGCGACGAAGTT
ATCGTGCCACCTTTTACCTTTGTTGCTTCTGTAGAAGCGATTTTCATGGCCGGTGCTGTGCCAATTTTTGCCGAAATCGA
CGAGACGCTGTGTCTATCACCAGAAGGCATTGAAGCGGCGATCACCCCACGTACTAAAGCGGTGAACTTAGTACACATGT
GTGGCTCTATGGCCAAGATGGACGAAATCAAAGCCGTTTGCGCTAAACACAACATCGTATTGTTAGAAGATGCTTGCCAA
GCCATTGGTGGCAGCTACAAGGGCCAAGCCCTAGGTACTATCGGTGATGTAGGTTGCTACTCTTTCGATTCTGTTAAAAC
CATCACCTGTGGTGAAGGCGGCGCGGTGATCACCAATAACACCGAAATCTACGATCACGCTCATATGTTCTCCGATCACG
GCCATGACCATATTGGTAAAGACCGTGGCGCCGAGTCACACCCAATTATGGGTCTGAACTTCCGTATCTCTGAAATGAAC
GCGGCCTTAGGTTTAGCCCAGTTACGTAAACTCGATACCATTATCGACATTCAACGTAAAAACAAAAAAGTCATTAAAGA
AGCGATGGCGAGCATTCCTGAAGTCAGCTTCCGCGAAATCCCCGATCCAGAGGGTGATTCAGCTGGCTTCTTAAGCTTTA
TGTTACCAACAGAGGCTCGTACCCAAGAGATCAGCAAAAAACTGGCTGAGAATGGCGTTGACGGTTGCTTCTACTGGTAC
GTGAACAACTGGCATTATCTGAAAAACTGGAAACACATTCAGGAGCTTAAGGCCCCTGCTGCGTTGCCAATCACATTAAT
CGCCGACAGACCTGACTATACTCAAATTTCTGTGCCGAAATCTGATGCCATTATGAGCCGCACTATTTCCATGCTCATTA
AATTGTCTTGGACCGATGCTCAGATTGCCGAGCGTATTGAAAACATTAAGAAAGCATTTGCCCAATAA

Upstream 100 bases:

>100_bases
TTTCATCAATAAAACATCGCAAGGGATCTTTAGCCCAGTTATAATCCGCCAGTTAATTGCAGCGCGACCATGCGCCACAA
ATTCTAAGGAGATACCTTCC

Downstream 100 bases:

>100_bases
TTAAACGGGAGTTTTTGCAATGAGTTTTAAAAATTTTAAAGTAGTTGAAAAGATGATCTTCGGTCGTGGCTCCTTCGCAC
AATTAGACGAAGTATTAGCT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 394

Protein sequence:

>395_residues
MPGFELFGPEEKQEVADVMEHGFTFRYNFDHMRNDRWKTRDMEQLLCEKMNVKHAHLLSSGTAALQTALMAAGIGAGDEV
IVPPFTFVASVEAIFMAGAVPIFAEIDETLCLSPEGIEAAITPRTKAVNLVHMCGSMAKMDEIKAVCAKHNIVLLEDACQ
AIGGSYKGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNTEIYDHAHMFSDHGHDHIGKDRGAESHPIMGLNFRISEMN
AALGLAQLRKLDTIIDIQRKNKKVIKEAMASIPEVSFREIPDPEGDSAGFLSFMLPTEARTQEISKKLAENGVDGCFYWY
VNNWHYLKNWKHIQELKAPAALPITLIADRPDYTQISVPKSDAIMSRTISMLIKLSWTDAQIAERIENIKKAFAQ

Sequences:

>Translated_395_residues
MPGFELFGPEEKQEVADVMEHGFTFRYNFDHMRNDRWKTRDMEQLLCEKMNVKHAHLLSSGTAALQTALMAAGIGAGDEV
IVPPFTFVASVEAIFMAGAVPIFAEIDETLCLSPEGIEAAITPRTKAVNLVHMCGSMAKMDEIKAVCAKHNIVLLEDACQ
AIGGSYKGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNTEIYDHAHMFSDHGHDHIGKDRGAESHPIMGLNFRISEMN
AALGLAQLRKLDTIIDIQRKNKKVIKEAMASIPEVSFREIPDPEGDSAGFLSFMLPTEARTQEISKKLAENGVDGCFYWY
VNNWHYLKNWKHIQELKAPAALPITLIADRPDYTQISVPKSDAIMSRTISMLIKLSWTDAQIAERIENIKKAFAQ
>Mature_394_residues
PGFELFGPEEKQEVADVMEHGFTFRYNFDHMRNDRWKTRDMEQLLCEKMNVKHAHLLSSGTAALQTALMAAGIGAGDEVI
VPPFTFVASVEAIFMAGAVPIFAEIDETLCLSPEGIEAAITPRTKAVNLVHMCGSMAKMDEIKAVCAKHNIVLLEDACQA
IGGSYKGQALGTIGDVGCYSFDSVKTITCGEGGAVITNNTEIYDHAHMFSDHGHDHIGKDRGAESHPIMGLNFRISEMNA
ALGLAQLRKLDTIIDIQRKNKKVIKEAMASIPEVSFREIPDPEGDSAGFLSFMLPTEARTQEISKKLAENGVDGCFYWYV
NNWHYLKNWKHIQELKAPAALPITLIADRPDYTQISVPKSDAIMSRTISMLIKLSWTDAQIAERIENIKKAFAQ

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=261, Percent_Identity=35.632183908046, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI2367285, Length=253, Percent_Identity=33.9920948616601, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 43637; Mature: 43505

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGFELFGPEEKQEVADVMEHGFTFRYNFDHMRNDRWKTRDMEQLLCEKMNVKHAHLLSS
CCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHC
GTAALQTALMAAGIGAGDEVIVPPFTFVASVEAIFMAGAVPIFAEIDETLCLSPEGIEAA
CHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCCCEEE
ITPRTKAVNLVHMCGSMAKMDEIKAVCAKHNIVLLEDACQAIGGSYKGQALGTIGDVGCY
ECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEHHHHHHCCCCCCCCCCCCCCCCCCC
SFDSVKTITCGEGGAVITNNTEIYDHAHMFSDHGHDHIGKDRGAESHPIMGLNFRISEMN
CCCCEEEEEECCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEHHHH
AALGLAQLRKLDTIIDIQRKNKKVIKEAMASIPEVSFREIPDPEGDSAGFLSFMLPTEAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEECCCHHH
TQEISKKLAENGVDGCFYWYVNNWHYLKNWKHIQELKAPAALPITLIADRPDYTQISVPK
HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCC
SDAIMSRTISMLIKLSWTDAQIAERIENIKKAFAQ
HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PGFELFGPEEKQEVADVMEHGFTFRYNFDHMRNDRWKTRDMEQLLCEKMNVKHAHLLSS
CCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHC
GTAALQTALMAAGIGAGDEVIVPPFTFVASVEAIFMAGAVPIFAEIDETLCLSPEGIEAA
CHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCCCEEE
ITPRTKAVNLVHMCGSMAKMDEIKAVCAKHNIVLLEDACQAIGGSYKGQALGTIGDVGCY
ECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEHHHHHHCCCCCCCCCCCCCCCCCCC
SFDSVKTITCGEGGAVITNNTEIYDHAHMFSDHGHDHIGKDRGAESHPIMGLNFRISEMN
CCCCEEEEEECCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEHHHH
AALGLAQLRKLDTIIDIQRKNKKVIKEAMASIPEVSFREIPDPEGDSAGFLSFMLPTEAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCEEEEECCCHHH
TQEISKKLAENGVDGCFYWYVNNWHYLKNWKHIQELKAPAALPITLIADRPDYTQISVPK
HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCC
SDAIMSRTISMLIKLSWTDAQIAERIENIKKAFAQ
HHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]