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The map label for this gene is ihfA [H]

Identifier: 117920310

GI number: 117920310

Start: 2210660

End: 2210956

Strand: Direct

Name: ihfA [H]

Synonym: Shewana3_1865

Alternate gene names: 117920310

Gene position: 2210660-2210956 (Clockwise)

Preceding gene: 117920309

Following gene: 117920311

Centisome position: 44.46

GC content: 48.15

Gene sequence:

>297_bases
ATGGCACTTACCAAAGCCGAAATGGCAGAACATCTTTTTGAAACACTAGGCATTAACAAGCGTGTAGCTAAAGAGATGGT
TGAGTCGTTCTTTGAAGAAATTCGAGGCGCACTTGAAAGTGGTGAGCAGGTCAAGTTATCTGGCTTTGGCAACTTTGACC
TTAGGGATAAGAATCAAAGACCGGGAAGGAACCCAAAAACAGGCGAGGATATCCCGATTTCCGCTCGCCGTGTCGTGACC
TTCCGTCCCGGCCAGAAACTGAAAACTCGCGTAGAAGCAGCTAACGCGGGCAAGTAA

Upstream 100 bases:

>100_bases
CACTACTCGTACACTTGAGGAAAAAGAGATCGCTGAGACAGTAGAATCAGTTGTTTCTGCCCTGAAGACCGAGTTCAACG
CATCGTTGAGGGATTAAAGT

Downstream 100 bases:

>100_bases
TTTCTTAAAGTTTGATAGGAAAGCCACTCCATCGCGAGTGGCTTTCCTATTTTCTTCCTATGCGAATTCAGTCTTTAACT
GTCTGAGGTGATTCCTTTGT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 98; Mature: 97

Protein sequence:

>98_residues
MALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPISARRVVT
FRPGQKLKTRVEAANAGK

Sequences:

>Translated_98_residues
MALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPISARRVVT
FRPGQKLKTRVEAANAGK
>Mature_97_residues
ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPISARRVVTF
RPGQKLKTRVEAANAGK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=95, Percent_Identity=84.2105263157895, Blast_Score=165, Evalue=4e-43,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=32.5842696629214, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1787141, Length=89, Percent_Identity=33.7078651685393, Blast_Score=61, Evalue=1e-11,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10947; Mature: 10815

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQR
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
PGRNPKTGEDIPISARRVVTFRPGQKLKTRVEAANAGK
CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
ALTKAEMAEHLFETLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQR
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC
PGRNPKTGEDIPISARRVVTFRPGQKLKTRVEAANAGK
CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA