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The map label for this gene is yoaA [H]

Identifier: 117920304

GI number: 117920304

Start: 2200160

End: 2202184

Strand: Direct

Name: yoaA [H]

Synonym: Shewana3_1859

Alternate gene names: 117920304

Gene position: 2200160-2202184 (Clockwise)

Preceding gene: 117920287

Following gene: 117920305

Centisome position: 44.25

GC content: 49.53

Gene sequence:

>2025_bases
ATGAAAGGACCTTGCTCGCCCTTGAATCACACCCGACGCCCTGCTATGCGGCAAGCCAAACTTCAGCAATCCAATCAGCA
GTCTAGAGACGCTCAACGTCCGATGAGCCGATTGGCGAGTGAAGTGCTGCGCGCTTTTGCCAGCGATGGGGTGCTCGCCA
AGCATATTCAAGGGTTTAGTGCGCGTCAGAGTCAGGTTGAAATGGCGCAAATCATCAGTGAAGCGATTGCCAGCAAGGGC
AATGCACTGATTGAAGCGGGCACAGGGGTCGGTAAAACCTTCGCGTATTTAATTCCAGCCATCTTAAGTGGCAAGCAAGT
GATCGTGAGCACGGGCAGTAAAAACCTGCAGGAGCAATTATTTCTAAAGGATTTACCCGCGTTGACCTCTATGCTTGGGA
TTGCGCCCAAGCTCGCGCTATTGAAAGGTCGCAATAACTATTTATGCCAACATCGACTCGATAAGCAGATGCAGGAGGCC
AGCCATATTGAGGCGCGATTATTGGATGATTTACTCAAAATCAACCAATGGGCGGGCATGAGTAAGGATGGCGATATCGG
TGGCTTAACTTCTGTTGCCGAAAACTCTCCCGCGCTTCCCTTAGTGGTCAGTACTAAAGAGACCTGTCTTGGCCAGCGCT
GCGAATTTTATGATGCTTGTTTTACCCGCAAGGCCCGCGGCCGCGCCATGGACGCAAAAATCATTGTGGTGAATCATCAC
TTATTCTTTGCCGACAGCGTGTTAAAGGATACGGGCTTTGCCGAGCTGTTGCCCGATCCCGATGTTGTGATCTTCGATGA
GGCGCATTTGTTGCCAGACATCTGCGTCAGTTACTTTGGGCAACAATCCTCGAGTCGAACCATTGATGATTATCTGCAAA
AGTTATTGCAGATTTACCAAACTGAGCTCAGCGATACGGGGCAGATAGCTCAATTCTGTCAGCGCTGTTTAACCAAGTTA
AGTGATTGGCATAATGCATTATTTTCGAGCGGCGAGTCGGACTGGCGGCTGCAGCTTGGCAATAAATCCATCGCCTTAGC
CTCATGGGATTTATTGGCTGAATTAACCGCACTGCAAAAGCTGTTACTTGTACACGTGGGGCGCAGCGAATTATTGGATG
ATATTGCGGTAAAGCTGACTGAGTTAAACCATAAACTGAATCAATTTTTTAATTGCGATAATCCGCAGGCGGCGTACAGC
GTTGAGTTTGGTAGCCGTTTTGTCATGCTACGGATGTCACCCATCAATATTGCCCGCGAATGTCAGCAGCTATTTGTGGC
CAATACTAGCTGGATTTTTACTTCGGCGACCCTGCAAGTGAACCGCAGCCTAGACCATTTTGCACAGGAGCTTGGGATAA
GCGATGCCAAGGCACATATTTTAGACAGTCCCTTCGATTATCCACGTCAGGCTTTATTTTGTGTGCCGAGACAACTGGGG
AATGTGACGAATCAGCAGCAAGCACTTAAGCAGTTAGTCGATGTGTGTGTAAAAGCGATTGAGGCGGCGCAGGGACGAAC
CTTCATTCTGTTTACCAGCCATAAAATGCTCGAGCAAACCGCGCTGGCATTACGCACACGGACTCAATATCCGTTATTAG
TGCAAGGGCAGGCGGGTAAGCAGAGCCTACTGACCAAGTTTCGCCAACTGGGAAATGCGGTGTTACTGGGGACGAGCAGT
TTTTGGGAAGGGGTGGACGTTCGCGGCAAGTTATTAAGCTGCGTGATTATCGATAAGCTACCCTTTGTCTCGCCCGATGA
GCCGCTTTACCGTGCTCGCGCCGACAATATCAGCCGTCAGGGGGGCGATCCTTTTACTCAAGTGTCGTTACCTCAAGCGA
TTATTGCGCTCAAACAAGGGGTTGGACGTTTGATCCGTGACGAAAAGGACTGCGGCGTACTCATTCTGTGTGATAATCGT
ATTGTGAATCGCGCCTACGGACAGGCCTTTTTAAATTCCCTGCCACCGATGTCCCGCACTCGAGATTTAGACCAAGCCCT
GCAATTTTTAAGGAAAATCCCTTAA

Upstream 100 bases:

>100_bases
GGCGGGCTTAATTACACTGCGGCGACGGAATCAGGCTCTTTAACGCTTGCTGACTAATTTACCCTCGGTTAGCCATCTCT
GAACCGTATTTTTTAACCCT

Downstream 100 bases:

>100_bases
TACAATAAGAAGTTGGAGCTAAAACGATTCATTTGTGTAGGTTTTTTATAGAGAGAATGAACGTGTTTACTTGGTTAAAA
GGGTTAGTTTCTAAAGATGT

Product: helicase c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 674; Mature: 674

Protein sequence:

>674_residues
MKGPCSPLNHTRRPAMRQAKLQQSNQQSRDAQRPMSRLASEVLRAFASDGVLAKHIQGFSARQSQVEMAQIISEAIASKG
NALIEAGTGVGKTFAYLIPAILSGKQVIVSTGSKNLQEQLFLKDLPALTSMLGIAPKLALLKGRNNYLCQHRLDKQMQEA
SHIEARLLDDLLKINQWAGMSKDGDIGGLTSVAENSPALPLVVSTKETCLGQRCEFYDACFTRKARGRAMDAKIIVVNHH
LFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVSYFGQQSSSRTIDDYLQKLLQIYQTELSDTGQIAQFCQRCLTKL
SDWHNALFSSGESDWRLQLGNKSIALASWDLLAELTALQKLLLVHVGRSELLDDIAVKLTELNHKLNQFFNCDNPQAAYS
VEFGSRFVMLRMSPINIARECQQLFVANTSWIFTSATLQVNRSLDHFAQELGISDAKAHILDSPFDYPRQALFCVPRQLG
NVTNQQQALKQLVDVCVKAIEAAQGRTFILFTSHKMLEQTALALRTRTQYPLLVQGQAGKQSLLTKFRQLGNAVLLGTSS
FWEGVDVRGKLLSCVIIDKLPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVGRLIRDEKDCGVLILCDNR
IVNRAYGQAFLNSLPPMSRTRDLDQALQFLRKIP

Sequences:

>Translated_674_residues
MKGPCSPLNHTRRPAMRQAKLQQSNQQSRDAQRPMSRLASEVLRAFASDGVLAKHIQGFSARQSQVEMAQIISEAIASKG
NALIEAGTGVGKTFAYLIPAILSGKQVIVSTGSKNLQEQLFLKDLPALTSMLGIAPKLALLKGRNNYLCQHRLDKQMQEA
SHIEARLLDDLLKINQWAGMSKDGDIGGLTSVAENSPALPLVVSTKETCLGQRCEFYDACFTRKARGRAMDAKIIVVNHH
LFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVSYFGQQSSSRTIDDYLQKLLQIYQTELSDTGQIAQFCQRCLTKL
SDWHNALFSSGESDWRLQLGNKSIALASWDLLAELTALQKLLLVHVGRSELLDDIAVKLTELNHKLNQFFNCDNPQAAYS
VEFGSRFVMLRMSPINIARECQQLFVANTSWIFTSATLQVNRSLDHFAQELGISDAKAHILDSPFDYPRQALFCVPRQLG
NVTNQQQALKQLVDVCVKAIEAAQGRTFILFTSHKMLEQTALALRTRTQYPLLVQGQAGKQSLLTKFRQLGNAVLLGTSS
FWEGVDVRGKLLSCVIIDKLPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVGRLIRDEKDCGVLILCDNR
IVNRAYGQAFLNSLPPMSRTRDLDQALQFLRKIP
>Mature_674_residues
MKGPCSPLNHTRRPAMRQAKLQQSNQQSRDAQRPMSRLASEVLRAFASDGVLAKHIQGFSARQSQVEMAQIISEAIASKG
NALIEAGTGVGKTFAYLIPAILSGKQVIVSTGSKNLQEQLFLKDLPALTSMLGIAPKLALLKGRNNYLCQHRLDKQMQEA
SHIEARLLDDLLKINQWAGMSKDGDIGGLTSVAENSPALPLVVSTKETCLGQRCEFYDACFTRKARGRAMDAKIIVVNHH
LFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVSYFGQQSSSRTIDDYLQKLLQIYQTELSDTGQIAQFCQRCLTKL
SDWHNALFSSGESDWRLQLGNKSIALASWDLLAELTALQKLLLVHVGRSELLDDIAVKLTELNHKLNQFFNCDNPQAAYS
VEFGSRFVMLRMSPINIARECQQLFVANTSWIFTSATLQVNRSLDHFAQELGISDAKAHILDSPFDYPRQALFCVPRQLG
NVTNQQQALKQLVDVCVKAIEAAQGRTFILFTSHKMLEQTALALRTRTQYPLLVQGQAGKQSLLTKFRQLGNAVLLGTSS
FWEGVDVRGKLLSCVIIDKLPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVGRLIRDEKDCGVLILCDNR
IVNRAYGQAFLNSLPPMSRTRDLDQALQFLRKIP

Specific function: Unknown

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase ATP-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788110, Length=639, Percent_Identity=47.1048513302034, Blast_Score=560, Evalue=1e-161,
Organism=Escherichia coli, GI1787018, Length=690, Percent_Identity=26.6666666666667, Blast_Score=154, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR006935 [H]

Pfam domain/function: PF06733 DEAD_2; PF04851 ResIII [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 74870; Mature: 74870

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGPCSPLNHTRRPAMRQAKLQQSNQQSRDAQRPMSRLASEVLRAFASDGVLAKHIQGFS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCH
ARQSQVEMAQIISEAIASKGNALIEAGTGVGKTFAYLIPAILSGKQVIVSTGSKNLQEQL
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
FLKDLPALTSMLGIAPKLALLKGRNNYLCQHRLDKQMQEASHIEARLLDDLLKINQWAGM
HHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SKDGDIGGLTSVAENSPALPLVVSTKETCLGQRCEFYDACFTRKARGRAMDAKIIVVNHH
CCCCCCCCHHHHHCCCCCCEEEECCHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEEECH
LFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVSYFGQQSSSRTIDDYLQKLLQIYQ
HHHHHHHHHCCCCHHHCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TELSDTGQIAQFCQRCLTKLSDWHNALFSSGESDWRLQLGNKSIALASWDLLAELTALQK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEHHHHHHHHHHHHHH
LLLVHVGRSELLDDIAVKLTELNHKLNQFFNCDNPQAAYSVEFGSRFVMLRMSPINIARE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCHHHHHH
CQQLFVANTSWIFTSATLQVNRSLDHFAQELGISDAKAHILDSPFDYPRQALFCVPRQLG
HHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHC
NVTNQQQALKQLVDVCVKAIEAAQGRTFILFTSHKMLEQTALALRTRTQYPLLVQGQAGK
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEECCCCH
QSLLTKFRQLGNAVLLGTSSFWEGVDVRGKLLSCVIIDKLPFVSPDEPLYRARADNISRQ
HHHHHHHHHHCCEEEEECCHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
GGDPFTQVSLPQAIIALKQGVGRLIRDEKDCGVLILCDNRIVNRAYGQAFLNSLPPMSRT
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHH
RDLDQALQFLRKIP
CCHHHHHHHHHCCC
>Mature Secondary Structure
MKGPCSPLNHTRRPAMRQAKLQQSNQQSRDAQRPMSRLASEVLRAFASDGVLAKHIQGFS
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCH
ARQSQVEMAQIISEAIASKGNALIEAGTGVGKTFAYLIPAILSGKQVIVSTGSKNLQEQL
HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
FLKDLPALTSMLGIAPKLALLKGRNNYLCQHRLDKQMQEASHIEARLLDDLLKINQWAGM
HHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SKDGDIGGLTSVAENSPALPLVVSTKETCLGQRCEFYDACFTRKARGRAMDAKIIVVNHH
CCCCCCCCHHHHHCCCCCCEEEECCHHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEEECH
LFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVSYFGQQSSSRTIDDYLQKLLQIYQ
HHHHHHHHHCCCCHHHCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TELSDTGQIAQFCQRCLTKLSDWHNALFSSGESDWRLQLGNKSIALASWDLLAELTALQK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEHHHHHHHHHHHHHH
LLLVHVGRSELLDDIAVKLTELNHKLNQFFNCDNPQAAYSVEFGSRFVMLRMSPINIARE
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCHHHHHH
CQQLFVANTSWIFTSATLQVNRSLDHFAQELGISDAKAHILDSPFDYPRQALFCVPRQLG
HHHHHHCCCCEEEEEEEEEECCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHC
NVTNQQQALKQLVDVCVKAIEAAQGRTFILFTSHKMLEQTALALRTRTQYPLLVQGQAGK
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEECCCCH
QSLLTKFRQLGNAVLLGTSSFWEGVDVRGKLLSCVIIDKLPFVSPDEPLYRARADNISRQ
HHHHHHHHHHCCEEEEECCHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCC
GGDPFTQVSLPQAIIALKQGVGRLIRDEKDCGVLILCDNRIVNRAYGQAFLNSLPPMSRT
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHH
RDLDQALQFLRKIP
CCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]