Click here to switch to the map view.

The map label for this gene is rnk [H]

Identifier: 117920161

GI number: 117920161

Start: 2019250

End: 2019657

Strand: Direct

Name: rnk [H]

Synonym: Shewana3_1714

Alternate gene names: 117920161

Gene position: 2019250-2019657 (Clockwise)

Preceding gene: 117920160

Following gene: 117920162

Centisome position: 40.61

GC content: 51.96

Gene sequence:

>408_bases
GTGAAAACACCAAAGATCATTATTTCAGAAATCGATTTAGAAAGACTCGAGCGTCTGTTGGAGTCATTACCGGCGAACGC
CTTCCCAGGGCGTGCGGCATTGGAGGCGGAACTCGACCGGGCCGACATTGTGCCCGCAGCGCAAATGCCCGGTAATGTGG
TGACGATGAATTCTGAAGTGAGATTTAGCGTGTCATCCAGTCAGGATACCTTCTGCTTACGGTTAGTCTATCCAAAGGAT
GCGGCAGGTGAGGGCACCATTTCTATTCTCGCTCCCGTGGGCAGTGCCTTATTGGGCTTATCCCAAGGGGATGAAATCGA
ATGGCCAGGCCCAGGTGGCTCAATGGTCAAAGTGCGTATCGAAGAAATCGTTTATCAGCCAGAGCGTAGCGGTGACTTCC
ACCGTTAA

Upstream 100 bases:

>100_bases
GCTGCGAGCGTATTTTTATATCGGTTTATCCCATTGGGGGAGGATAGGCCAGCACAGATGTTTAACCCTAAGGGACATCT
ATTTACACGAGGGAAAGACT

Downstream 100 bases:

>100_bases
TCGCGCTGGATATTCGTGTGTAGAGGGCAATATGAAGGAAGCCAAAATGATTATACAAACAGAGCGTTTAATACTCAGGC
CATTTACCGAGCAGGATATC

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MKTPKIIISEIDLERLERLLESLPANAFPGRAALEAELDRADIVPAAQMPGNVVTMNSEVRFSVSSSQDTFCLRLVYPKD
AAGEGTISILAPVGSALLGLSQGDEIEWPGPGGSMVKVRIEEIVYQPERSGDFHR

Sequences:

>Translated_135_residues
MKTPKIIISEIDLERLERLLESLPANAFPGRAALEAELDRADIVPAAQMPGNVVTMNSEVRFSVSSSQDTFCLRLVYPKD
AAGEGTISILAPVGSALLGLSQGDEIEWPGPGGSMVKVRIEEIVYQPERSGDFHR
>Mature_135_residues
MKTPKIIISEIDLERLERLLESLPANAFPGRAALEAELDRADIVPAAQMPGNVVTMNSEVRFSVSSSQDTFCLRLVYPKD
AAGEGTISILAPVGSALLGLSQGDEIEWPGPGGSMVKVRIEEIVYQPERSGDFHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=134, Percent_Identity=44.7761194029851, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14637; Mature: 14637

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPKIIISEIDLERLERLLESLPANAFPGRAALEAELDRADIVPAAQMPGNVVTMNSEV
CCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCE
RFSVSSSQDTFCLRLVYPKDAAGEGTISILAPVGSALLGLSQGDEIEWPGPGGSMVKVRI
EEEECCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHCCCCCCCEECCCCCCCEEEEEE
EEIVYQPERSGDFHR
HHHHCCCCCCCCCCC
>Mature Secondary Structure
MKTPKIIISEIDLERLERLLESLPANAFPGRAALEAELDRADIVPAAQMPGNVVTMNSEV
CCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCCE
RFSVSSSQDTFCLRLVYPKDAAGEGTISILAPVGSALLGLSQGDEIEWPGPGGSMVKVRI
EEEECCCCCEEEEEEECCCCCCCCCEEEEEECHHHHHHCCCCCCCEECCCCCCCEEEEEE
EEIVYQPERSGDFHR
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]