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The map label for this gene is yeeY [H]

Identifier: 117920130

GI number: 117920130

Start: 1978257

End: 1979156

Strand: Reverse

Name: yeeY [H]

Synonym: Shewana3_1683

Alternate gene names: 117920130

Gene position: 1979156-1978257 (Counterclockwise)

Preceding gene: 117920133

Following gene: 117920121

Centisome position: 39.8

GC content: 50.44

Gene sequence:

>900_bases
ATGACCTTAGAACAACTGCTGATGTTCAATACCGTCGCCCTCGCCGGCTCACTAAAGGCCGCCAGTGACAAACTTCATAA
GACCCAACCGGCGATCAGTCAGAGCATTAAACAGCTGGAATCCCAGTTAGATTTAGTGCTGTTCGACCGCCAAGGGTATC
GCTTAACGCTCACTCAAGAGGGCCGAAAGCTGTTGCAATACGCCCAGCGCGTGTTGAATGAAGCGCAGGAGATGCGACAA
GTCGCTAAGCATTTAGCTAAAGGTAACGAGGCCAGCATCACCTTAGCCTTCGAAGCATCCTTTAATCTTACCCGCATCTT
GCCGATACTGGAGCGCACACAAAATGAGTTCCCTCACACTCAAATCATTCTTAAACAAGAATATTTAACCGGCGCGCTTG
AAGCCTTAAATCAAGGCAAAGCCGATATTGCCATTTCAGCGGGCGGCATCGAGCCAATACGCTCAAGCCATTTTGAGCTG
GCCTACTTATTTTCAGGCAGTCTCTTGGATGTGGCCTCGCCGCGCTTACTGAGTCGCCACCCCACTCTAGGCCATGTGCG
CGAATTGGTGAACGAGTACCAAATTGTGATCCAAGATACCGGCACTGGCACCGCCAATATCGAATTTGGGGTGCAAGCTG
GGCAACGCCGTTGGTATGTTAATGATTTTTATACGAAGAGAATGCTCATTCAGAGCGGCATGGGCTGGGGGAAATTACCA
CATTATTTAGTGGAACAAGCCCTTGCGGATGGAAGCCTATTACCACTGGAGCTGCGGGAAAGGCAGAACCTTATCCAACT
CGATTACTATGTGATGCGTCCACCCCACTCGCCATTAGGCCCAGTGGCGCAGGCACTGTGGGAAAACTTAGTCCAATTAG
CCGCTAAGCAAAGCGTCTAA

Upstream 100 bases:

>100_bases
CTGTCATATGGCGGAATTATGCGCCCACAAAAAATAAATAAATATGGAATAATATCTAACATCTCCTAAAATAATTCTTT
ATTTGTTTAAGAGTCTTGCC

Downstream 100 bases:

>100_bases
GCAAGCAATCTGGGTATCACACGCTCAAGATATGTCGACTGAATAAGCATTTATGGAGCAGTCGAAGAGCTAATGACTAA
GCAGATTCAACCACTCTTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTLEQLLMFNTVALAGSLKAASDKLHKTQPAISQSIKQLESQLDLVLFDRQGYRLTLTQEGRKLLQYAQRVLNEAQEMRQ
VAKHLAKGNEASITLAFEASFNLTRILPILERTQNEFPHTQIILKQEYLTGALEALNQGKADIAISAGGIEPIRSSHFEL
AYLFSGSLLDVASPRLLSRHPTLGHVRELVNEYQIVIQDTGTGTANIEFGVQAGQRRWYVNDFYTKRMLIQSGMGWGKLP
HYLVEQALADGSLLPLELRERQNLIQLDYYVMRPPHSPLGPVAQALWENLVQLAAKQSV

Sequences:

>Translated_299_residues
MTLEQLLMFNTVALAGSLKAASDKLHKTQPAISQSIKQLESQLDLVLFDRQGYRLTLTQEGRKLLQYAQRVLNEAQEMRQ
VAKHLAKGNEASITLAFEASFNLTRILPILERTQNEFPHTQIILKQEYLTGALEALNQGKADIAISAGGIEPIRSSHFEL
AYLFSGSLLDVASPRLLSRHPTLGHVRELVNEYQIVIQDTGTGTANIEFGVQAGQRRWYVNDFYTKRMLIQSGMGWGKLP
HYLVEQALADGSLLPLELRERQNLIQLDYYVMRPPHSPLGPVAQALWENLVQLAAKQSV
>Mature_298_residues
TLEQLLMFNTVALAGSLKAASDKLHKTQPAISQSIKQLESQLDLVLFDRQGYRLTLTQEGRKLLQYAQRVLNEAQEMRQV
AKHLAKGNEASITLAFEASFNLTRILPILERTQNEFPHTQIILKQEYLTGALEALNQGKADIAISAGGIEPIRSSHFELA
YLFSGSLLDVASPRLLSRHPTLGHVRELVNEYQIVIQDTGTGTANIEFGVQAGQRRWYVNDFYTKRMLIQSGMGWGKLPH
YLVEQALADGSLLPLELRERQNLIQLDYYVMRPPHSPLGPVAQALWENLVQLAAKQSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=258, Percent_Identity=32.5581395348837, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789492, Length=258, Percent_Identity=31.0077519379845, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1786508, Length=302, Percent_Identity=29.8013245033113, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI1787949, Length=255, Percent_Identity=25.0980392156863, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI157672245, Length=160, Percent_Identity=30.625, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=152, Percent_Identity=32.2368421052632, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786713, Length=286, Percent_Identity=27.972027972028, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1786401, Length=277, Percent_Identity=24.5487364620939, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=150, Percent_Identity=31.3333333333333, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87082132, Length=280, Percent_Identity=24.6428571428571, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=200, Percent_Identity=25, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790262, Length=241, Percent_Identity=26.5560165975104, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33571; Mature: 33440

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEQLLMFNTVALAGSLKAASDKLHKTQPAISQSIKQLESQLDLVLFDRQGYRLTLTQE
CCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCEEEEHHH
GRKLLQYAQRVLNEAQEMRQVAKHLAKGNEASITLAFEASFNLTRILPILERTQNEFPHT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCC
QIILKQEYLTGALEALNQGKADIAISAGGIEPIRSSHFELAYLFSGSLLDVASPRLLSRH
EEEEHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCEEEEEECCCHHHHCCCHHHHCC
PTLGHVRELVNEYQIVIQDTGTGTANIEFGVQAGQRRWYVNDFYTKRMLIQSGMGWGKLP
CCHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCCH
HYLVEQALADGSLLPLELRERQNLIQLDYYVMRPPHSPLGPVAQALWENLVQLAAKQSV
HHHHHHHHCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLEQLLMFNTVALAGSLKAASDKLHKTQPAISQSIKQLESQLDLVLFDRQGYRLTLTQE
CHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCEEEEHHH
GRKLLQYAQRVLNEAQEMRQVAKHLAKGNEASITLAFEASFNLTRILPILERTQNEFPHT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCC
QIILKQEYLTGALEALNQGKADIAISAGGIEPIRSSHFELAYLFSGSLLDVASPRLLSRH
EEEEHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCEEEEEECCCHHHHCCCHHHHCC
PTLGHVRELVNEYQIVIQDTGTGTANIEFGVQAGQRRWYVNDFYTKRMLIQSGMGWGKLP
CCHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCCCCH
HYLVEQALADGSLLPLELRERQNLIQLDYYVMRPPHSPLGPVAQALWENLVQLAAKQSV
HHHHHHHHCCCCCCCHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]