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The map label for this gene is paiB [H]

Identifier: 117920108

GI number: 117920108

Start: 1953318

End: 1954001

Strand: Reverse

Name: paiB [H]

Synonym: Shewana3_1661

Alternate gene names: 117920108

Gene position: 1954001-1953318 (Counterclockwise)

Preceding gene: 117920109

Following gene: 117920107

Centisome position: 39.3

GC content: 46.35

Gene sequence:

>684_bases
ATGGGAAGTAAGAAAACTTTCTATCAGCCCAATACTCCTAATATGACAAGGCTTGACATGTATATCCCTAAAAATGTGGC
ACTTCACGATAAGCAAGCGATAGCCGACTTAATTAACCATTTTGGTTTTGGATTACTCATCTCCCCCACCTTAGAAGCGA
CCCACTTACCTCTACTTTACGAAGCGGCCGACGATGGGCAAGAGTATCTCTATGGTCATATAGCAAAAGCCAATGGGCAT
TGGCAGCAGCTTGATGGCCAGCAAGTGCTAGTAGTGTTCTCTGGGCCGCATTCCTATATTTCACCCACTTGGTACGCTAA
TAGTCCTGCGGTACCGACTTGGAACTACGCAGCAGTTCACTGCACTGGCAGAGTCGAGCTCTTAGATGCTAGCGCGACCG
CCAAAACCATAGATAAATTAATCGAAAAATATGAACCGAGCCTATCGGGAAATGCCGCAATAATGCCTGCTGAGTATGTT
GACAAACTCTCGCAGGCAATTGTTGGTTTTCGCGTGATTGTCGATTCGATTCAAGCGAAGGAAAAATTAGGACAACACAG
AAAGCGAGAAGACCAAATGGGTGTCTATCACGCCTTGACCCAAAGCGCTTCAGCCGAAAGTCGCGCCTTAGCAGAATACA
TGCTTAACAGAAATATTGGGACTGGGCAGAACAAGGAAGCGTGA

Upstream 100 bases:

>100_bases
CATGAGTGTTGGATTTTTTATGCGTTAATGACATCTCCACGCTAGAAAGAGCGCTTTTAAGACCATCAGTAAGCGAAATT
AAACAGTTAAGATCAAATGG

Downstream 100 bases:

>100_bases
TGGCCGCCATTTCGATTAGACAAGCACAAATAGCCGACCTTAACGCCATGGCTAACTTACTGCTGCAGCTGGGTTACAGT
GCCAGCGAGGCACAATTACA

Product: negative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MGSKKTFYQPNTPNMTRLDMYIPKNVALHDKQAIADLINHFGFGLLISPTLEATHLPLLYEAADDGQEYLYGHIAKANGH
WQQLDGQQVLVVFSGPHSYISPTWYANSPAVPTWNYAAVHCTGRVELLDASATAKTIDKLIEKYEPSLSGNAAIMPAEYV
DKLSQAIVGFRVIVDSIQAKEKLGQHRKREDQMGVYHALTQSASAESRALAEYMLNRNIGTGQNKEA

Sequences:

>Translated_227_residues
MGSKKTFYQPNTPNMTRLDMYIPKNVALHDKQAIADLINHFGFGLLISPTLEATHLPLLYEAADDGQEYLYGHIAKANGH
WQQLDGQQVLVVFSGPHSYISPTWYANSPAVPTWNYAAVHCTGRVELLDASATAKTIDKLIEKYEPSLSGNAAIMPAEYV
DKLSQAIVGFRVIVDSIQAKEKLGQHRKREDQMGVYHALTQSASAESRALAEYMLNRNIGTGQNKEA
>Mature_226_residues
GSKKTFYQPNTPNMTRLDMYIPKNVALHDKQAIADLINHFGFGLLISPTLEATHLPLLYEAADDGQEYLYGHIAKANGHW
QQLDGQQVLVVFSGPHSYISPTWYANSPAVPTWNYAAVHCTGRVELLDASATAKTIDKLIEKYEPSLSGNAAIMPAEYVD
KLSQAIVGFRVIVDSIQAKEKLGQHRKREDQMGVYHALTQSASAESRALAEYMLNRNIGTGQNKEA

Specific function: Involved in the reduction of extracellular and cell- associated protease levels, as well as in the reduced levels of alpha-amylase, levansucrase, alkaline phosphatase and sporulation inhibition, when present in high copy number [H]

COG id: COG2808

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the paiB family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322780, Length=76, Percent_Identity=40.7894736842105, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007396
- InterPro:   IPR012349
- InterPro:   IPR009002 [H]

Pfam domain/function: PF04299 FMN_bind_2 [H]

EC number: NA

Molecular weight: Translated: 25133; Mature: 25002

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKKTFYQPNTPNMTRLDMYIPKNVALHDKQAIADLINHFGFGLLISPTLEATHLPLLY
CCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEE
EAADDGQEYLYGHIAKANGHWQQLDGQQVLVVFSGPHSYISPTWYANSPAVPTWNYAAVH
ECCCCCHHHHEEEEECCCCCCEECCCCEEEEEEECCCCCCCCCEECCCCCCCCCCCEEEE
CTGRVELLDASATAKTIDKLIEKYEPSLSGNAAIMPAEYVDKLSQAIVGFRVIVDSIQAK
ECCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
EKLGQHRKREDQMGVYHALTQSASAESRALAEYMLNRNIGTGQNKEA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GSKKTFYQPNTPNMTRLDMYIPKNVALHDKQAIADLINHFGFGLLISPTLEATHLPLLY
CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEE
EAADDGQEYLYGHIAKANGHWQQLDGQQVLVVFSGPHSYISPTWYANSPAVPTWNYAAVH
ECCCCCHHHHEEEEECCCCCCEECCCCEEEEEEECCCCCCCCCEECCCCCCCCCCCEEEE
CTGRVELLDASATAKTIDKLIEKYEPSLSGNAAIMPAEYVDKLSQAIVGFRVIVDSIQAK
ECCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
EKLGQHRKREDQMGVYHALTQSASAESRALAEYMLNRNIGTGQNKEA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2108124; 9384377 [H]