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The map label for this gene is yfcH [H]

Identifier: 117919990

GI number: 117919990

Start: 1799862

End: 1800752

Strand: Reverse

Name: yfcH [H]

Synonym: Shewana3_1542

Alternate gene names: 117919990

Gene position: 1800752-1799862 (Counterclockwise)

Preceding gene: 117919991

Following gene: 117919989

Centisome position: 36.22

GC content: 53.31

Gene sequence:

>891_bases
ATGAAGATATTGATAACGGGAGCTAGTGGGTTTATTGGTCAGCAGTTAGTCGCCCATTTAGCCAATCAGCATGAATTGGT
CTTGCTCACCCGCCACCCCGGCACCAGTCGGCAACTATTAGGCCCGCAGCACCAATATCTCAGCACCTTAGATGAAGTTG
ATGATTTAAATCATATCGATGCGGTGATAAATCTCGCCGGCGAGCCCATTGTGGCTAAACGTTGGAGCGCGCAGCAAAAA
CAGCGCATCTGCGATAGCCGCTGGAATACCACGGCGCGACTGAGCCAACTGATTTTACACAGCTGCACCCCGCCCAAAGT
GATGATAAGTGGCTCTGCCATTGGTTTTTATGGCCGCCAAGGTGCCATCCCCATCGATGAAACCGCAGCACCACACCCCG
AATTTAGCCATGATATTTGTCAGGAATGGGAGCGACTCGCGCAGCAAGCCGCCACCAAAACCCGCGTCTGCATCCTACGC
ACGGGTATAGTGCTTGGCCATGGCGGCGCACTCGCGAAGATGTTGCCACCGTTTAAATTGGGGCTAGGTGGACCTATAGG
CCACGGATGCCAGGGCATGAGTTGGATACACATTCAGGATATGGTGGCGCTGATAGACTTTTTACTCAACCATGACGAAT
GCGAGGGCATTTTCAATGCCACCGCGCCTAATCCTGTCAGTAACGCCGAGTTTGCCACCACCCTAGGTCGAGTATTAAAT
CGCCCGACCTTTATCACGACCCCAGCCGCGATGCTGCGACTCGCGATGGGCGAAATGGCGGAGTTACTTATCGAAGGGCA
ATTTGTGCTCCCCAAACATGCGCTAGATGCAGGGTTTAGCTTCCGTTTTGAGCGACTCGAACCTGCGCTAAGGGACGTAC
TCGCGAGTTAA

Upstream 100 bases:

>100_bases
ATGGAGCTGTGTTACCAAAAACAGTAATAAAGTGATCCCCGCACGCCCGTTATCGTATATTGCTTATAATCAAAGAAAAC
CATCAACCAAGGACTCGACG

Downstream 100 bases:

>100_bases
CAGTTTTTTCGACTCCGCCATTATCGGTAACTGGCTTGAGAATAAAATGTTACCAAGCGCAGAGTCGAGGGTTAACGCTA
TGCTGAATAATGGCTTGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MKILITGASGFIGQQLVAHLANQHELVLLTRHPGTSRQLLGPQHQYLSTLDEVDDLNHIDAVINLAGEPIVAKRWSAQQK
QRICDSRWNTTARLSQLILHSCTPPKVMISGSAIGFYGRQGAIPIDETAAPHPEFSHDICQEWERLAQQAATKTRVCILR
TGIVLGHGGALAKMLPPFKLGLGGPIGHGCQGMSWIHIQDMVALIDFLLNHDECEGIFNATAPNPVSNAEFATTLGRVLN
RPTFITTPAAMLRLAMGEMAELLIEGQFVLPKHALDAGFSFRFERLEPALRDVLAS

Sequences:

>Translated_296_residues
MKILITGASGFIGQQLVAHLANQHELVLLTRHPGTSRQLLGPQHQYLSTLDEVDDLNHIDAVINLAGEPIVAKRWSAQQK
QRICDSRWNTTARLSQLILHSCTPPKVMISGSAIGFYGRQGAIPIDETAAPHPEFSHDICQEWERLAQQAATKTRVCILR
TGIVLGHGGALAKMLPPFKLGLGGPIGHGCQGMSWIHIQDMVALIDFLLNHDECEGIFNATAPNPVSNAEFATTLGRVLN
RPTFITTPAAMLRLAMGEMAELLIEGQFVLPKHALDAGFSFRFERLEPALRDVLAS
>Mature_296_residues
MKILITGASGFIGQQLVAHLANQHELVLLTRHPGTSRQLLGPQHQYLSTLDEVDDLNHIDAVINLAGEPIVAKRWSAQQK
QRICDSRWNTTARLSQLILHSCTPPKVMISGSAIGFYGRQGAIPIDETAAPHPEFSHDICQEWERLAQQAATKTRVCILR
TGIVLGHGGALAKMLPPFKLGLGGPIGHGCQGMSWIHIQDMVALIDFLLNHDECEGIFNATAPNPVSNAEFATTLGRVLN
RPTFITTPAAMLRLAMGEMAELLIEGQFVLPKHALDAGFSFRFERLEPALRDVLAS

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=303, Percent_Identity=36.3036303630363, Blast_Score=186, Evalue=2e-47,
Organism=Escherichia coli, GI1788642, Length=297, Percent_Identity=50.5050505050505, Blast_Score=291, Evalue=3e-80,
Organism=Drosophila melanogaster, GI28573846, Length=296, Percent_Identity=30.4054054054054, Blast_Score=144, Evalue=6e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 32354; Mature: 32354

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILITGASGFIGQQLVAHLANQHELVLLTRHPGTSRQLLGPQHQYLSTLDEVDDLNHID
CEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AVINLAGEPIVAKRWSAQQKQRICDSRWNTTARLSQLILHSCTPPKVMISGSAIGFYGRQ
HHHHHCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCEEEECCCC
GAIPIDETAAPHPEFSHDICQEWERLAQQAATKTRVCILRTGIVLGHGGALAKMLPPFKL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECEEEECCCHHHHHCCCHHC
GLGGPIGHGCQGMSWIHIQDMVALIDFLLNHDECEGIFNATAPNPVSNAEFATTLGRVLN
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
RPTFITTPAAMLRLAMGEMAELLIEGQFVLPKHALDAGFSFRFERLEPALRDVLAS
CCCEEECHHHHHHHHHHHHHHHHHCCCEECCHHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKILITGASGFIGQQLVAHLANQHELVLLTRHPGTSRQLLGPQHQYLSTLDEVDDLNHID
CEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AVINLAGEPIVAKRWSAQQKQRICDSRWNTTARLSQLILHSCTPPKVMISGSAIGFYGRQ
HHHHHCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCEEEECCCC
GAIPIDETAAPHPEFSHDICQEWERLAQQAATKTRVCILRTGIVLGHGGALAKMLPPFKL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECEEEECCCHHHHHCCCHHC
GLGGPIGHGCQGMSWIHIQDMVALIDFLLNHDECEGIFNATAPNPVSNAEFATTLGRVLN
CCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
RPTFITTPAAMLRLAMGEMAELLIEGQFVLPKHALDAGFSFRFERLEPALRDVLAS
CCCEEECHHHHHHHHHHHHHHHHHCCCEECCHHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]