The gene/protein map for NC_007777 is currently unavailable.
Definition Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence.
Accession NC_008577
Length 4,972,204

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The map label for this gene is yciK [H]

Identifier: 117919976

GI number: 117919976

Start: 1778066

End: 1778803

Strand: Reverse

Name: yciK [H]

Synonym: Shewana3_1528

Alternate gene names: 117919976

Gene position: 1778803-1778066 (Counterclockwise)

Preceding gene: 117919980

Following gene: 117919968

Centisome position: 35.77

GC content: 48.24

Gene sequence:

>738_bases
ATGTTGGAATATCAAGCAGCAAAAGATTTACTCCAAGGTAAAACCATCCTGGTGACAGGCGCTGGCGCAGGTATCGGTCG
CGCGGCGGCCATTGAATTTGCCAAACACGGTGCTACCGTGATTTTACTCGGTAAAACCGTCAAAAAACTCGAAGCCGTAT
ACGATGTAATCGAACAGGCGGGTTACCCAACGCCAGCGATCGTGCCGTTGGATTTAAAAGGCGCCACCGAACAAAACTAC
CGCGATATGGCCGAAACCATTGGCGAGCAGTTTGGTCATTTAGATGGTTTACTGCACAACGCTAGTTTACTCGGCGCCTT
AGGTCCGTTTGAACACATCGATATTCCATCACTCGAAGATGTACTTAAAGTCAACGTCACCTCACAGGTCATGCTGACCA
AGGCCTTATTGCCTATTATGCGTCAAGCACCCAGTGCCTCGATTATCTTTACCTCAAGCAGTGTTGGCCGTCAGGGCCGC
GCCTACTGGGGCCCCTATGCCTTCTCTAAATTTGCAACCGAAGGTATGATGCAAGTACTCGCCCACGAATGTGATGGCAC
TTCTGTACGCGTTAACAGCATTAATCCAGGTGCGACTCGCACCGAAATGCGTGCTAAAGCATACCCTGCCGAAAATCCAT
TAGATTTAAAAACGGCCGAAGAAATCATGCCAACTTACCTCTATTTAATGGGGCAAGATTCTAGCGAAATTAACGGTCAG
CAATTTAACGCTCAATAA

Upstream 100 bases:

>100_bases
TATTTATAACAAAGTTTCATTCATTTGTTTGAAACATGCGTTTAGCAATTCGGCGACTCTAGAAGTGGCGGGCATTTTCG
CCAAGAGGAATAAAAGGCTC

Downstream 100 bases:

>100_bases
GCAATGCAGCTCTAACGCACGAATAGATAAAAGTAAAGAATCCGCCTTCTTAGAAGGCGGCTTTGATTTGCCCCTGGAAG
GGGCTATTTCCTTACACCTA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLEYQAAKDLLQGKTILVTGAGAGIGRAAAIEFAKHGATVILLGKTVKKLEAVYDVIEQAGYPTPAIVPLDLKGATEQNY
RDMAETIGEQFGHLDGLLHNASLLGALGPFEHIDIPSLEDVLKVNVTSQVMLTKALLPIMRQAPSASIIFTSSSVGRQGR
AYWGPYAFSKFATEGMMQVLAHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDSSEINGQ
QFNAQ

Sequences:

>Translated_245_residues
MLEYQAAKDLLQGKTILVTGAGAGIGRAAAIEFAKHGATVILLGKTVKKLEAVYDVIEQAGYPTPAIVPLDLKGATEQNY
RDMAETIGEQFGHLDGLLHNASLLGALGPFEHIDIPSLEDVLKVNVTSQVMLTKALLPIMRQAPSASIIFTSSSVGRQGR
AYWGPYAFSKFATEGMMQVLAHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDSSEINGQ
QFNAQ
>Mature_245_residues
MLEYQAAKDLLQGKTILVTGAGAGIGRAAAIEFAKHGATVILLGKTVKKLEAVYDVIEQAGYPTPAIVPLDLKGATEQNY
RDMAETIGEQFGHLDGLLHNASLLGALGPFEHIDIPSLEDVLKVNVTSQVMLTKALLPIMRQAPSASIIFTSSSVGRQGR
AYWGPYAFSKFATEGMMQVLAHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDSSEINGQ
QFNAQ

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI157739938, Length=199, Percent_Identity=29.6482412060301, Blast_Score=87, Evalue=9e-18,
Organism=Homo sapiens, GI4503817, Length=222, Percent_Identity=28.3783783783784, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI32455239, Length=192, Percent_Identity=32.8125, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI5031765, Length=192, Percent_Identity=32.8125, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7657478, Length=196, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI4504505, Length=241, Percent_Identity=28.2157676348548, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI4557649, Length=214, Percent_Identity=28.5046728971963, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI20149619, Length=235, Percent_Identity=27.2340425531915, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI210032110, Length=192, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=25.1028806584362, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI19923817, Length=261, Percent_Identity=23.7547892720307, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI142976729, Length=194, Percent_Identity=27.319587628866, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=27.2, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI223718074, Length=170, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI19743808, Length=204, Percent_Identity=26.9607843137255, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=51.6393442622951, Blast_Score=235, Evalue=2e-63,
Organism=Escherichia coli, GI87082100, Length=212, Percent_Identity=32.0754716981132, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790717, Length=194, Percent_Identity=30.4123711340206, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789378, Length=242, Percent_Identity=28.099173553719, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=27.3858921161826, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786701, Length=217, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786812, Length=202, Percent_Identity=25.7425742574257, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=27.4725274725275, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082160, Length=244, Percent_Identity=27.4590163934426, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787905, Length=241, Percent_Identity=28.6307053941909, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17544670, Length=260, Percent_Identity=28.0769230769231, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=211, Percent_Identity=29.8578199052133, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=196, Percent_Identity=30.1020408163265, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=31.5, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562904, Length=196, Percent_Identity=28.0612244897959, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=31.0160427807487, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=196, Percent_Identity=30.1020408163265, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=29.5918367346939, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=195, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=204, Percent_Identity=27.4509803921569, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115534660, Length=198, Percent_Identity=27.7777777777778, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=31.0344827586207, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17557780, Length=220, Percent_Identity=26.3636363636364, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=194, Percent_Identity=30.4123711340206, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=249, Percent_Identity=27.3092369477912, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=199, Percent_Identity=30.1507537688442, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=28.1914893617021, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=243, Percent_Identity=23.8683127572016, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=189, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=204, Percent_Identity=27.9411764705882, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=235, Percent_Identity=27.2340425531915, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=176, Percent_Identity=28.9772727272727, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17536025, Length=200, Percent_Identity=31.5, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI25152911, Length=196, Percent_Identity=25.5102040816327, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17558628, Length=198, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=213, Percent_Identity=31.924882629108, Blast_Score=90, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6322861, Length=243, Percent_Identity=30.0411522633745, Blast_Score=82, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6322227, Length=200, Percent_Identity=29.5, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=27.8688524590164, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644339, Length=197, Percent_Identity=34.010152284264, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=30.5785123966942, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI23397609, Length=193, Percent_Identity=34.1968911917098, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI28571526, Length=198, Percent_Identity=30.3030303030303, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI21356301, Length=210, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21358495, Length=215, Percent_Identity=29.7674418604651, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21357041, Length=198, Percent_Identity=29.7979797979798, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45553409, Length=253, Percent_Identity=25.6916996047431, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24647948, Length=253, Percent_Identity=25.6916996047431, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24647946, Length=253, Percent_Identity=25.6916996047431, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24639444, Length=240, Percent_Identity=27.5, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21357673, Length=197, Percent_Identity=27.9187817258883, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26402; Mature: 26402

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MLEYQAAKDLLQGKTILVTGAGAGIGRAAAIEFAKHGATVILLGKTVKKLEAVYDVIEQA
CCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHC
GYPTPAIVPLDLKGATEQNYRDMAETIGEQFGHLDGLLHNASLLGALGPFEHIDIPSLED
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
VLKVNVTSQVMLTKALLPIMRQAPSASIIFTSSSVGRQGRAYWGPYAFSKFATEGMMQVL
HHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHH
AHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDSSEINGQ
HHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCC
QFNAQ
CCCCC
>Mature Secondary Structure
MLEYQAAKDLLQGKTILVTGAGAGIGRAAAIEFAKHGATVILLGKTVKKLEAVYDVIEQA
CCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHC
GYPTPAIVPLDLKGATEQNYRDMAETIGEQFGHLDGLLHNASLLGALGPFEHIDIPSLED
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
VLKVNVTSQVMLTKALLPIMRQAPSASIIFTSSSVGRQGRAYWGPYAFSKFATEGMMQVL
HHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHH
AHECDGTSVRVNSINPGATRTEMRAKAYPAENPLDLKTAEEIMPTYLYLMGQDSSEINGQ
HHHCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEECCCCCCCCCC
QFNAQ
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]