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The map label for this gene is yrbD [H]

Identifier: 117919932

GI number: 117919932

Start: 1727544

End: 1729028

Strand: Reverse

Name: yrbD [H]

Synonym: Shewana3_1484

Alternate gene names: 117919932

Gene position: 1729028-1727544 (Counterclockwise)

Preceding gene: 117919933

Following gene: 117919922

Centisome position: 34.77

GC content: 50.51

Gene sequence:

>1485_bases
ATGAATGAGATTGTTAATGCGGTCAACAATATCGTTTGGAGCCCCGCACTCGTTTATCTTTGCCTCGGTGTAGGACTCTT
TTTCTCCCTGCGCTCACGTTTCCTACAGTTACGCCATTTACCCGAAATGATCCGTTTAATGTTTGATGGTAAGAGCACTG
ATGCTGGTGTGTCTTCCTTCCAAGCCTTAGCCATGACTTTAGCAGGTCGTGTGGGAACCGGAAACATTGCCGGTGTCGCC
ACGGCGATTACCTTCGGCGGTCCGGGGGCATTGTTTTGGATGTGGATGGTAGCGTTTCTTGGCGCCAGCTCCGCATTCGT
CGAATCCACCTTAGGCCAAGTCTACAAAGAAAAAATCAATGGAGAGTATCGCGGCGGCCCCGCCTTTTACATTGAAAAAG
GCTTAGGCATGAAGTGGTACGCTTGGACATTTGCCATTGCGACCATTTTTGCCTGCGGAATTTTACTGCCTGGCGTGCAA
GCCAACTCGATTGGTTCGAGCCTAAAAACCGCCTTCGATATCGACCCTAACGTCACCGCCGCTATCCTCGCTATGCTGTT
AGGGTTCATTATCTTTGGTGGCGTAAAACGTATTGCCCACTTTGCCAGTACCGTAGTGCCCTTTATGGCACTGGGTTATA
TCATTGTCGCCTGCGTGATTATTGCCCTTAACATTGGTCAGCTGCCCGATATTATTATGTTGATCCTAAAAAGTGCCTTC
GGACTCGATGCGGGCTTTGGTGCGATTTTGGGTCTTGCGATTATGTGGGGGGTAAAACGTGGTATTTACTCAAACGAAGC
GGGCCAAGGTACTGGGCCGCACGCTTCTTCTGCCGCCGCCGTGAGCCACCCTGCCAAACAAGGTTTAGTGCAAGCCTTCT
CAGTGTATGTCGATACCCTATTTGTCTGTTCAGCTACCGGCTTTATGCTACTGATCACGGGTTTGTATAATGTGCAGGGC
CCAGATGGCGCCGCGCTGTATACTGGGATTGCGGGCGTCGCAGCAGGCCCAGGTTATGTGCAAACCGCAATGGAAAGCAT
GATGCCAGGCTTTGGTAATATGTTCGTTGCCGTCGCGCTGTTCTTCTTCGCCTTCACCACCATTGTGGCCTACTACTATA
TCGCCGAAACCAACATAGCCTATATCAATCGCAAGGCGAATCGTCCTTGGCTCACAGTGGTGCTGAAAGTGGTGCTGATG
GCATCAACTGTTTATGGCACAGTGAAAACCGCCGATTTGGCCTGGGGCATGGGTGACATTGGTGTGGGACTGATGGCATG
GCTAAACATCATCGCCATTATTCTGCTGCAACGCATCGCCTTTACTTGCCTGAAGGATTATGAGTCGCAACAGAAACAAG
GGGTTGAGCCGTTGTTCGATCCTGAAAAACTCGGTATTCCCCACGCAGACTATTGGGTTGAACGCAAAAATGCGCAGGAT
GAACTAGCGCAGAGTCAATCCAGCGAGACTCCTAAAATCTCCTAA

Upstream 100 bases:

>100_bases
ACGTCTTAACCTTAGGCCAAATTGGCCGTTTAGTACCCAAACTTACAAGCAAATATCTTAAAAACTCTGCAAAAACAACA
GAATATTGGAGTTAAATTAT

Downstream 100 bases:

>100_bases
GGATTGCAGCTCCCAATAAAAAAGCCAGTGACTTATCACTGGCTTTTTTATTGTGCATTTTAAAGTGTGCCCACTTAACG
CCAAGCACACTCTTTTATCT

Product: amino acid carrier protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MNEIVNAVNNIVWSPALVYLCLGVGLFFSLRSRFLQLRHLPEMIRLMFDGKSTDAGVSSFQALAMTLAGRVGTGNIAGVA
TAITFGGPGALFWMWMVAFLGASSAFVESTLGQVYKEKINGEYRGGPAFYIEKGLGMKWYAWTFAIATIFACGILLPGVQ
ANSIGSSLKTAFDIDPNVTAAILAMLLGFIIFGGVKRIAHFASTVVPFMALGYIIVACVIIALNIGQLPDIIMLILKSAF
GLDAGFGAILGLAIMWGVKRGIYSNEAGQGTGPHASSAAAVSHPAKQGLVQAFSVYVDTLFVCSATGFMLLITGLYNVQG
PDGAALYTGIAGVAAGPGYVQTAMESMMPGFGNMFVAVALFFFAFTTIVAYYYIAETNIAYINRKANRPWLTVVLKVVLM
ASTVYGTVKTADLAWGMGDIGVGLMAWLNIIAIILLQRIAFTCLKDYESQQKQGVEPLFDPEKLGIPHADYWVERKNAQD
ELAQSQSSETPKIS

Sequences:

>Translated_494_residues
MNEIVNAVNNIVWSPALVYLCLGVGLFFSLRSRFLQLRHLPEMIRLMFDGKSTDAGVSSFQALAMTLAGRVGTGNIAGVA
TAITFGGPGALFWMWMVAFLGASSAFVESTLGQVYKEKINGEYRGGPAFYIEKGLGMKWYAWTFAIATIFACGILLPGVQ
ANSIGSSLKTAFDIDPNVTAAILAMLLGFIIFGGVKRIAHFASTVVPFMALGYIIVACVIIALNIGQLPDIIMLILKSAF
GLDAGFGAILGLAIMWGVKRGIYSNEAGQGTGPHASSAAAVSHPAKQGLVQAFSVYVDTLFVCSATGFMLLITGLYNVQG
PDGAALYTGIAGVAAGPGYVQTAMESMMPGFGNMFVAVALFFFAFTTIVAYYYIAETNIAYINRKANRPWLTVVLKVVLM
ASTVYGTVKTADLAWGMGDIGVGLMAWLNIIAIILLQRIAFTCLKDYESQQKQGVEPLFDPEKLGIPHADYWVERKNAQD
ELAQSQSSETPKIS
>Mature_494_residues
MNEIVNAVNNIVWSPALVYLCLGVGLFFSLRSRFLQLRHLPEMIRLMFDGKSTDAGVSSFQALAMTLAGRVGTGNIAGVA
TAITFGGPGALFWMWMVAFLGASSAFVESTLGQVYKEKINGEYRGGPAFYIEKGLGMKWYAWTFAIATIFACGILLPGVQ
ANSIGSSLKTAFDIDPNVTAAILAMLLGFIIFGGVKRIAHFASTVVPFMALGYIIVACVIIALNIGQLPDIIMLILKSAF
GLDAGFGAILGLAIMWGVKRGIYSNEAGQGTGPHASSAAAVSHPAKQGLVQAFSVYVDTLFVCSATGFMLLITGLYNVQG
PDGAALYTGIAGVAAGPGYVQTAMESMMPGFGNMFVAVALFFFAFTTIVAYYYIAETNIAYINRKANRPWLTVVLKVVLM
ASTVYGTVKTADLAWGMGDIGVGLMAWLNIIAIILLQRIAFTCLKDYESQQKQGVEPLFDPEKLGIPHADYWVERKNAQD
ELAQSQSSETPKIS

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=471, Percent_Identity=37.791932059448, Blast_Score=310, Evalue=1e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 52871; Mature: 52871

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIVNAVNNIVWSPALVYLCLGVGLFFSLRSRFLQLRHLPEMIRLMFDGKSTDAGVSSF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
QALAMTLAGRVGTGNIAGVATAITFGGPGALFWMWMVAFLGASSAFVESTLGQVYKEKIN
HHHHHHHHCCCCCCCHHHHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GEYRGGPAFYIEKGLGMKWYAWTFAIATIFACGILLPGVQANSIGSSLKTAFDIDPNVTA
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHH
AILAMLLGFIIFGGVKRIAHFASTVVPFMALGYIIVACVIIALNIGQLPDIIMLILKSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GLDAGFGAILGLAIMWGVKRGIYSNEAGQGTGPHASSAAAVSHPAKQGLVQAFSVYVDTL
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHH
FVCSATGFMLLITGLYNVQGPDGAALYTGIAGVAAGPGYVQTAMESMMPGFGNMFVAVAL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHH
FFFAFTTIVAYYYIAETNIAYINRKANRPWLTVVLKVVLMASTVYGTVKTADLAWGMGDI
HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHH
GVGLMAWLNIIAIILLQRIAFTCLKDYESQQKQGVEPLFDPEKLGIPHADYWVERKNAQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHCCHHH
ELAQSQSSETPKIS
HHHHHCCCCCCCCC
>Mature Secondary Structure
MNEIVNAVNNIVWSPALVYLCLGVGLFFSLRSRFLQLRHLPEMIRLMFDGKSTDAGVSSF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
QALAMTLAGRVGTGNIAGVATAITFGGPGALFWMWMVAFLGASSAFVESTLGQVYKEKIN
HHHHHHHHCCCCCCCHHHHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GEYRGGPAFYIEKGLGMKWYAWTFAIATIFACGILLPGVQANSIGSSLKTAFDIDPNVTA
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHH
AILAMLLGFIIFGGVKRIAHFASTVVPFMALGYIIVACVIIALNIGQLPDIIMLILKSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
GLDAGFGAILGLAIMWGVKRGIYSNEAGQGTGPHASSAAAVSHPAKQGLVQAFSVYVDTL
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHH
FVCSATGFMLLITGLYNVQGPDGAALYTGIAGVAAGPGYVQTAMESMMPGFGNMFVAVAL
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHH
FFFAFTTIVAYYYIAETNIAYINRKANRPWLTVVLKVVLMASTVYGTVKTADLAWGMGDI
HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHH
GVGLMAWLNIIAIILLQRIAFTCLKDYESQQKQGVEPLFDPEKLGIPHADYWVERKNAQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHCCHHH
ELAQSQSSETPKIS
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]