Click here to switch to the map view.

The map label for this gene is yfcN [C]

Identifier: 117919915

GI number: 117919915

Start: 1706153

End: 1706683

Strand: Reverse

Name: yfcN [C]

Synonym: Shewana3_1467

Alternate gene names: 117919915

Gene position: 1706683-1706153 (Counterclockwise)

Preceding gene: 117919922

Following gene: 117919913

Centisome position: 34.32

GC content: 49.34

Gene sequence:

>531_bases
ATGAATAAAAACGATGATAAAGAAGGCATGGCGATGTTTTCGGCGCTGATCGAGGGGATAAAACCTATCGCCCAAGATAA
GCGGCATTTTCGCACGCCCCTAAAAACCAAACAGGAAATTGAACTGAAAGAGCAGCAACTGCATGCTGACAGTTATTTCT
CAGATACTTATCAACCTCTGCTGCCCGTTCAGGGGCCAATGCGTTGGCTCGACGAGGGTGTCGATAGTCTCGAGCTTAAA
CGCTTAAGACGCGGCGATTACCAACCGGATTTATTGCTAGACTTACACGGTTACCGCCAATCTGAGGCTAAACTCGAGCT
CGCGGCGCTCATTCAAGCCTGCGTAAAACAGCAAAGCCAATGTTGTTGTGTGATGCACGGTTACGGCACTGGCATACTTA
AACAGCAGGTGCCTATGTGGTTGGTGCAACATCCTAAGGTAAAAGCCTTTCATCAGGCCCCAAAAGAATGGGGTGGCGAT
GCGGCGCTGCTGGTGCTTATCGATATTGGCGACCAACCACATCGACGTTAA

Upstream 100 bases:

>100_bases
TCTACAAAGATCTTATCCAAAACGCTCTCCCGCTTGTTTGTTCGCAAACATTGTAACTGAACTCTATTCAGAAACCATAG
GATTCAATAGAATACCCGCC

Downstream 100 bases:

>100_bases
TGGACATATTTATCCTCTAAAAACAAAGGGCCCACTAATGTGAGCCCTTTGTTTTATCAAAGAAATTAACTAATGCTGTG
GGGCGCATGCTGCCAAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MNKNDDKEGMAMFSALIEGIKPIAQDKRHFRTPLKTKQEIELKEQQLHADSYFSDTYQPLLPVQGPMRWLDEGVDSLELK
RLRRGDYQPDLLLDLHGYRQSEAKLELAALIQACVKQQSQCCCVMHGYGTGILKQQVPMWLVQHPKVKAFHQAPKEWGGD
AALLVLIDIGDQPHRR

Sequences:

>Translated_176_residues
MNKNDDKEGMAMFSALIEGIKPIAQDKRHFRTPLKTKQEIELKEQQLHADSYFSDTYQPLLPVQGPMRWLDEGVDSLELK
RLRRGDYQPDLLLDLHGYRQSEAKLELAALIQACVKQQSQCCCVMHGYGTGILKQQVPMWLVQHPKVKAFHQAPKEWGGD
AALLVLIDIGDQPHRR
>Mature_176_residues
MNKNDDKEGMAMFSALIEGIKPIAQDKRHFRTPLKTKQEIELKEQQLHADSYFSDTYQPLLPVQGPMRWLDEGVDSLELK
RLRRGDYQPDLLLDLHGYRQSEAKLELAALIQACVKQQSQCCCVMHGYGTGILKQQVPMWLVQHPKVKAFHQAPKEWGGD
AALLVLIDIGDQPHRR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1788671, Length=169, Percent_Identity=51.4792899408284, Blast_Score=174, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 20159; Mature: 20159

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKNDDKEGMAMFSALIEGIKPIAQDKRHFRTPLKTKQEIELKEQQLHADSYFSDTYQPL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
LPVQGPMRWLDEGVDSLELKRLRRGDYQPDLLLDLHGYRQSEAKLELAALIQACVKQQSQ
CCCCCHHHHHHCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
CCCVMHGYGTGILKQQVPMWLVQHPKVKAFHQAPKEWGGDAALLVLIDIGDQPHRR
EEEEEECCCCCHHHHHCCHHHHCCCCHHHHHHCHHHHCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MNKNDDKEGMAMFSALIEGIKPIAQDKRHFRTPLKTKQEIELKEQQLHADSYFSDTYQPL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
LPVQGPMRWLDEGVDSLELKRLRRGDYQPDLLLDLHGYRQSEAKLELAALIQACVKQQSQ
CCCCCHHHHHHCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
CCCVMHGYGTGILKQQVPMWLVQHPKVKAFHQAPKEWGGDAALLVLIDIGDQPHRR
EEEEEECCCCCHHHHHCCHHHHCCCCHHHHHHCHHHHCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA