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The map label for this gene is ydgJ [C]

Identifier: 117919876

GI number: 117919876

Start: 1658274

End: 1659653

Strand: Reverse

Name: ydgJ [C]

Synonym: Shewana3_1428

Alternate gene names: 117919876

Gene position: 1659653-1658274 (Counterclockwise)

Preceding gene: 117919878

Following gene: 117919867

Centisome position: 33.38

GC content: 51.52

Gene sequence:

>1380_bases
ATGCACAATATTCATCGCCGCCATTTTCTAAAAGCTGCGGGCGCCGTTACCGCAGGTCTGGTTACGGCCAATATTGCCCT
CAATGCCAACGCCAGCAGCGTTGCCCCTAAACCCCGCGTTGGAAAATCCGTGATCGGACTTATCGCCCCAAAAATGGAGC
TGGTTAGAGTCGGTTTTATCGGTGTGGGAGAGCGGGGTTTTAGCCATGTCGAACAATTCTGTCACTTAGAAGGCGTGGAA
CTTAAAGCCATTTGTGATACCCACCAAGCCGTTATCGATAGAGCCGTTGAGCATATCGTTAAACAAAACCGGCCAAAACC
TGCGGTCTACACGGGGAATGATCTCAGCTATCGCGAACTGTTAAACCGCGATGATATCGATATTGTGATTATTTCAACCC
CGTGGGAATGGCACGCTCCCATGGCCATAGATACCATGGAAAGTGGTAAACACGCCTTTGTGGAAGTGCCATTGGCACTG
ACGGTGGAAGAATGCTGGCAACTTGTCGACACCGCCGAACGCACCCAGAAAAACTGCATGATGATGGAGAACGTCAATTA
CGGCCGCGAAGAATTGATGGTGCTCAACATGGTGCGCCAAGGTGTGTTTGGCGAGCTGCTCCACGGTGAGGCGGCTTATA
TCCATGAGCTGCGCTGGCAAATGAAGGAAATCGACCATAAAACCGGTTCGTGGCGCACCTATTGGCACACCAAACGCAAC
GGTAACTTATATCCGACCCACGGCTTAGGGCCGATTTCTCAATATATGAACATCAACCGCGGTGATCGTTTCGATTATCT
CACCTCCATGAGTTCACCCGCGCTCGGTCGCGCGCTGTATGCCAAACGAGAATTCCCTGCCGATCATGAGCGTAATCAGC
TCAAGTACATCAATGGCGATATGAGCACTAGCCTGATTAAAACCGTTAAGGGCCGAACCATTATGGTTCAGCACGATACC
ACTACTCCTCGGCCCTACAGCCGCCATAATCTTATTCAAGGCACCAATGGCGTTTTTGCCGGATTCCCAAATCGGATTGC
CGTTGAGCACGGCGGTTTTGGTAAGAGTTACCACGAGTGGGATATGGACATGCAAAAGTGGTATGACAAATACGATCATC
CACTCTGGCAACGAATTGGTAAAGAAGCCGAAATCAACGGCGGTCACGGCGGGATGGATTTTGTGATGCTCTGGCGTATG
GTCTATTGCCTACGTAACGGCGAGGCGCTCGATCAGGATGTGTACGATGGCGCCGCTTGGTCTGTGGTGAATATTTTAAG
TGAGCAATCGCTGAATAACCGCAGCAACTCGGTCAACTTCCCCGACTTTACCCGCGGCGCGTGGGAGCATGCCACGCCAT
TGGGGATTGTCGGCGCCTAA

Upstream 100 bases:

>100_bases
GGTTGTTACATCTTTTATTATTCACTCGGCTTGGGATTCTGATATAACAAACGGGATATACATTGCCCTACAAATAATCA
AAAAATAATGCAGGAAGTTT

Downstream 100 bases:

>100_bases
ATCACTCTAAATTGAGCGATTAACGTAAAGGGATACACTTAGGGTTATCCCTTTAATAGCAACCTATCGATTTAATCTTC
AACGAAAAATCACCACTTTG

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MHNIHRRHFLKAAGAVTAGLVTANIALNANASSVAPKPRVGKSVIGLIAPKMELVRVGFIGVGERGFSHVEQFCHLEGVE
LKAICDTHQAVIDRAVEHIVKQNRPKPAVYTGNDLSYRELLNRDDIDIVIISTPWEWHAPMAIDTMESGKHAFVEVPLAL
TVEECWQLVDTAERTQKNCMMMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
GNLYPTHGLGPISQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGDMSTSLIKTVKGRTIMVQHDT
TTPRPYSRHNLIQGTNGVFAGFPNRIAVEHGGFGKSYHEWDMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRM
VYCLRNGEALDQDVYDGAAWSVVNILSEQSLNNRSNSVNFPDFTRGAWEHATPLGIVGA

Sequences:

>Translated_459_residues
MHNIHRRHFLKAAGAVTAGLVTANIALNANASSVAPKPRVGKSVIGLIAPKMELVRVGFIGVGERGFSHVEQFCHLEGVE
LKAICDTHQAVIDRAVEHIVKQNRPKPAVYTGNDLSYRELLNRDDIDIVIISTPWEWHAPMAIDTMESGKHAFVEVPLAL
TVEECWQLVDTAERTQKNCMMMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
GNLYPTHGLGPISQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGDMSTSLIKTVKGRTIMVQHDT
TTPRPYSRHNLIQGTNGVFAGFPNRIAVEHGGFGKSYHEWDMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRM
VYCLRNGEALDQDVYDGAAWSVVNILSEQSLNNRSNSVNFPDFTRGAWEHATPLGIVGA
>Mature_459_residues
MHNIHRRHFLKAAGAVTAGLVTANIALNANASSVAPKPRVGKSVIGLIAPKMELVRVGFIGVGERGFSHVEQFCHLEGVE
LKAICDTHQAVIDRAVEHIVKQNRPKPAVYTGNDLSYRELLNRDDIDIVIISTPWEWHAPMAIDTMESGKHAFVEVPLAL
TVEECWQLVDTAERTQKNCMMMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
GNLYPTHGLGPISQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGDMSTSLIKTVKGRTIMVQHDT
TTPRPYSRHNLIQGTNGVFAGFPNRIAVEHGGFGKSYHEWDMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRM
VYCLRNGEALDQDVYDGAAWSVVNILSEQSLNNRSNSVNFPDFTRGAWEHATPLGIVGA

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): G1091_SHESA (A0KV43)

Other databases:

- EMBL:   CP000469
- RefSeq:   YP_869068.1
- ProteinModelPortal:   A0KV43
- SMR:   A0KV43
- GeneID:   4479645
- GenomeReviews:   CP000469_GR
- KEGG:   shn:Shewana3_1428
- NMPDR:   fig|94122.5.peg.1522
- eggNOG:   COG0673
- HOGENOM:   HBG611861
- OMA:   TGSWRTY
- ProtClustDB:   CLSK901939
- BioCyc:   SSP94122:SHEWANA3_1428-MONOMER
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- InterPro:   IPR019546
- Gene3D:   G3DSA:3.40.50.720
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF01408 GFO_IDH_MocA; PF10518 TAT_signal

EC number: 1.-.-.- [C]

Molecular weight: Translated: 52028; Mature: 52028

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS51318 TAT

Important sites: BINDING 86-86 BINDING 184-184 BINDING 213-213 BINDING 232-232 BINDING 244-244 BINDING 326-326

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNIHRRHFLKAAGAVTAGLVTANIALNANASSVAPKPRVGKSVIGLIAPKMELVRVGFI
CCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEE
GVGERGFSHVEQFCHLEGVELKAICDTHQAVIDRAVEHIVKQNRPKPAVYTGNDLSYREL
EECCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHH
LNRDDIDIVIISTPWEWHAPMAIDTMESGKHAFVEVPLALTVEECWQLVDTAERTQKNCM
CCCCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCEEEHHHHHHHHHHHHHHHHHEE
MMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
GNLYPTHGLGPISQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGD
CCCCCCCCCCHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEECCC
MSTSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIAVEHGGFGKSYHEW
HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCHHHH
DMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRMVYCLRNGEALDQDVYDGAAW
CCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHCHHHHCCHHH
SVVNILSEQSLNNRSNSVNFPDFTRGAWEHATPLGIVGA
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHNIHRRHFLKAAGAVTAGLVTANIALNANASSVAPKPRVGKSVIGLIAPKMELVRVGFI
CCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCEEEEEEEEE
GVGERGFSHVEQFCHLEGVELKAICDTHQAVIDRAVEHIVKQNRPKPAVYTGNDLSYREL
EECCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHH
LNRDDIDIVIISTPWEWHAPMAIDTMESGKHAFVEVPLALTVEECWQLVDTAERTQKNCM
CCCCCCEEEEEECCCCCCCCEEEECCCCCCEEEEEECCEEEHHHHHHHHHHHHHHHHHEE
MMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
GNLYPTHGLGPISQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGD
CCCCCCCCCCHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEECCC
MSTSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIAVEHGGFGKSYHEW
HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCHHHH
DMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRMVYCLRNGEALDQDVYDGAAW
CCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHCHHHHCCHHH
SVVNILSEQSLNNRSNSVNFPDFTRGAWEHATPLGIVGA
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA