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The map label for this gene is flgD [H]

Identifier: 117919771

GI number: 117919771

Start: 1535329

End: 1536108

Strand: Direct

Name: flgD [H]

Synonym: Shewana3_1323

Alternate gene names: 117919771

Gene position: 1535329-1536108 (Clockwise)

Preceding gene: 117919770

Following gene: 117919772

Centisome position: 30.88

GC content: 43.08

Gene sequence:

>780_bases
GTGAGCCTCATTAACCAACTGAGTCAAACCTCATCGCAGCTGACTCAAACAAACACTCAATCGAATACGGTATCAACCAA
TAACACCAAGACGTCGACTAATTCTACCGGCAATCCATTTTTGGATGGATTACGTTTGCCGACTAGTTCTGCTGTTCCAG
AGGCTAAGAGTCAGCAGCTCACTCAAGAGGATTTTTTCTCATTACTCAGCCAGCAGTTATCGATGCAGGATCCCTTTAAG
CCCGTTGATAACGACCAGATGATTGCACAGATGGCATCTTTTTCTACTGTCGATGGCATTTCTAAGTTAAATGATCAAAT
CGTTAATTTAAACAGTGTGATGACATCAAGCCAAGCTTTGCAAGCATCGGGATTAGTTGGGCGAAAAGTGCTGTTACCGA
CAGATACGGGTTATATCTCTGCAGAAAGCCCAGGCTTAAATGGTGTGATCAGTACTTCCGAGAAAATTCCCGTCATTAAT
GTTCGAATCGAAGATGATAAAGGGCAAGTCGTTAGAACATTTACTGTTGATGGTAGTAAGGGTGGTAACACTGATGTCAA
GTGGGATGGTTTGAATGATAAAGGAGAACCCGTTGCTGCAGGTAATTACTCGATTAAAGCATCGGGTTTGGTGAATGATA
AATCACAAGCGTTAGCTGTATCGACCTATGCGCATGTTACCAGTGTTTCTTTAGGTACTGCAGCGACTGGCGCCATTTTG
AATCTCAAGGGTGGAATGGCCTTTAAGCTGTCGGATGTACTTGCGATTAGTGAAGTTTAA

Upstream 100 bases:

>100_bases
CTCATATCAGATGAATGTTCAAGTGGCTGAGGCGGCAAAATCTATGCTGCAACAAACACTTGGGATGGGTAAATAATATG
CGTTATTTAGGAGGTACGTT

Downstream 100 bases:

>100_bases
TCGTTATCAAGATTGTAAATGGACATCACACTTGTCCATCATTGAATTGAGCAAATGTAGAGGTGAATTATGTCGTTTAA
CATTGCATTGAGTGGCATTT

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSLINQLSQTSSQLTQTNTQSNTVSTNNTKTSTNSTGNPFLDGLRLPTSSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFK
PVDNDQMIAQMASFSTVDGISKLNDQIVNLNSVMTSSQALQASGLVGRKVLLPTDTGYISAESPGLNGVISTSEKIPVIN
VRIEDDKGQVVRTFTVDGSKGGNTDVKWDGLNDKGEPVAAGNYSIKASGLVNDKSQALAVSTYAHVTSVSLGTAATGAIL
NLKGGMAFKLSDVLAISEV

Sequences:

>Translated_259_residues
MSLINQLSQTSSQLTQTNTQSNTVSTNNTKTSTNSTGNPFLDGLRLPTSSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFK
PVDNDQMIAQMASFSTVDGISKLNDQIVNLNSVMTSSQALQASGLVGRKVLLPTDTGYISAESPGLNGVISTSEKIPVIN
VRIEDDKGQVVRTFTVDGSKGGNTDVKWDGLNDKGEPVAAGNYSIKASGLVNDKSQALAVSTYAHVTSVSLGTAATGAIL
NLKGGMAFKLSDVLAISEV
>Mature_258_residues
SLINQLSQTSSQLTQTNTQSNTVSTNNTKTSTNSTGNPFLDGLRLPTSSAVPEAKSQQLTQEDFFSLLSQQLSMQDPFKP
VDNDQMIAQMASFSTVDGISKLNDQIVNLNSVMTSSQALQASGLVGRKVLLPTDTGYISAESPGLNGVISTSEKIPVINV
RIEDDKGQVVRTFTVDGSKGGNTDVKWDGLNDKGEPVAAGNYSIKASGLVNDKSQALAVSTYAHVTSVSLGTAATGAILN
LKGGMAFKLSDVLAISEV

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=155, Percent_Identity=32.9032258064516, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 27223; Mature: 27091

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLINQLSQTSSQLTQTNTQSNTVSTNNTKTSTNSTGNPFLDGLRLPTSSAVPEAKSQQL
CHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHC
TQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDQIVNLNSVMTSSQAL
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
QASGLVGRKVLLPTDTGYISAESPGLNGVISTSEKIPVINVRIEDDKGQVVRTFTVDGSK
HHCCCCCCEEEEECCCCEEEECCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEECCC
GGNTDVKWDGLNDKGEPVAAGNYSIKASGLVNDKSQALAVSTYAHVTSVSLGTAATGAIL
CCCCCEEECCCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEHHHHEEEECCCCCCCEEE
NLKGGMAFKLSDVLAISEV
EECCCCEEEEEEEEEECCC
>Mature Secondary Structure 
SLINQLSQTSSQLTQTNTQSNTVSTNNTKTSTNSTGNPFLDGLRLPTSSAVPEAKSQQL
HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHC
TQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDQIVNLNSVMTSSQAL
CHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
QASGLVGRKVLLPTDTGYISAESPGLNGVISTSEKIPVINVRIEDDKGQVVRTFTVDGSK
HHCCCCCCEEEEECCCCEEEECCCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEEECCC
GGNTDVKWDGLNDKGEPVAAGNYSIKASGLVNDKSQALAVSTYAHVTSVSLGTAATGAIL
CCCCCEEECCCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEHHHHEEEECCCCCCCEEE
NLKGGMAFKLSDVLAISEV
EECCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]