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The map label for this gene is yfbE [C]

Identifier: 117919751

GI number: 117919751

Start: 1517856

End: 1518998

Strand: Direct

Name: yfbE [C]

Synonym: Shewana3_1303

Alternate gene names: 117919751

Gene position: 1517856-1518998 (Clockwise)

Preceding gene: 117919750

Following gene: 117919762

Centisome position: 30.53

GC content: 50.74

Gene sequence:

>1143_bases
ATGATCCCCTATGGCAGACAGGATATTGACAGTACCGATATTGCAGCTGTGGTTGAGGTGCTTGAGTCAGATTTTTTGAC
CCAGGGACCCAAGGTTCCGGAATTTGAAAATGCCGTCTGTGACTATACAGGTGCTAATTTCGGTGTCGCTGTTAACAGTG
CAACCTCTGCCTTGCATATTGCCTGTCTCGCATTGGGGATTGGGCAGGGCGATTTGGTATGGACCTCGCCCATCACTTTC
GTCGCCTCGGCCAATTGCGCCCTGTACTGTGGCGCTGAAGTGGATTTTGTCGATGTGGACCCTGCCACGGGCAACATGTG
TTCCCAGGCTCTCGCCATCAAACTTGCCCAAGCAAAAGTGACAGGAACTTTGCCCAAAGTTGTCATTCCAGTACATCTGT
GTGGCCACAGCTGCGATATGGCCGCAATAGCATCGCTCGCTGCTGAATATGGTTTCAGGGTCATAGAGGACGCCTCCCAT
GGTATAGGTGGCGGTTTCCAAGGGCATAAACTCGGAAGTTGTTATTACTCGGACATCACTGTATTCAGCTTTCACCCGGT
CAAGATAATCACCTGTGCCGAAGGTGGTATGGCCATGACCAACAGCGCTGAGCTGGCCGAAAAGTTGAGACTGCTTCGCA
GCCACGGGATAGTTAGGTTGCCGCAGCAGATGCTAAGACCAAATGAAGGGGACTGGTATTACGAACAGCATGAGCTGGGG
TTTAACTACCGTATGACTGAGCTGCAGGCGGCGTTAGGTGTGTCCCAGATGAAACGCATCGATGCTTTTGTTAAGCGTCG
TAACGAGCTGGCCAACCGATATCGTCAGGGATTGTCAAGCCTTTGCCATTGTTTGGAATCCTTGGCCGGTTCCGACAGTG
CTTGGCATTTGCTGATTATCTGCCTGCGGGACAAGTCTCACAGAAAACACATTTTCGATGATATGAGGGCTGCCGGAATT
CAGGTGCATGTTCATTACTTTCCTGTGCATCTGCAGCCTTTCTACATGAACAAAGGATTCAAGCAAGGACAGTTCCCAGT
AGCGGAAGATTTTTATAGCCGCATCCTCAGTTTGCCATTGTTTCCCGGGCTAACCGAGGAGCAGCAAGCCTATGTTATTG
AGACCTTGTCGAAAGCCCTCTAG

Upstream 100 bases:

>100_bases
GAGAGAAAGGCACGTTGGTGGCTGCCGGTTTTGAATATAACTCCGGAAACAACAGTCATTTTTTGAATGTGAATGAGATC
CTTGATATGGACGCTTTAGC

Downstream 100 bases:

>100_bases
CCCATGCTGAGCAGGTCACTCAAACATTGACCAGCTGACAGGCGAGTTTACGCTGACATCGGTTGTCAGTTTACGGCCTA
TGATTTGCTCATAGAATTTG

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MIPYGRQDIDSTDIAAVVEVLESDFLTQGPKVPEFENAVCDYTGANFGVAVNSATSALHIACLALGIGQGDLVWTSPITF
VASANCALYCGAEVDFVDVDPATGNMCSQALAIKLAQAKVTGTLPKVVIPVHLCGHSCDMAAIASLAAEYGFRVIEDASH
GIGGGFQGHKLGSCYYSDITVFSFHPVKIITCAEGGMAMTNSAELAEKLRLLRSHGIVRLPQQMLRPNEGDWYYEQHELG
FNYRMTELQAALGVSQMKRIDAFVKRRNELANRYRQGLSSLCHCLESLAGSDSAWHLLIICLRDKSHRKHIFDDMRAAGI
QVHVHYFPVHLQPFYMNKGFKQGQFPVAEDFYSRILSLPLFPGLTEEQQAYVIETLSKAL

Sequences:

>Translated_380_residues
MIPYGRQDIDSTDIAAVVEVLESDFLTQGPKVPEFENAVCDYTGANFGVAVNSATSALHIACLALGIGQGDLVWTSPITF
VASANCALYCGAEVDFVDVDPATGNMCSQALAIKLAQAKVTGTLPKVVIPVHLCGHSCDMAAIASLAAEYGFRVIEDASH
GIGGGFQGHKLGSCYYSDITVFSFHPVKIITCAEGGMAMTNSAELAEKLRLLRSHGIVRLPQQMLRPNEGDWYYEQHELG
FNYRMTELQAALGVSQMKRIDAFVKRRNELANRYRQGLSSLCHCLESLAGSDSAWHLLIICLRDKSHRKHIFDDMRAAGI
QVHVHYFPVHLQPFYMNKGFKQGQFPVAEDFYSRILSLPLFPGLTEEQQAYVIETLSKAL
>Mature_380_residues
MIPYGRQDIDSTDIAAVVEVLESDFLTQGPKVPEFENAVCDYTGANFGVAVNSATSALHIACLALGIGQGDLVWTSPITF
VASANCALYCGAEVDFVDVDPATGNMCSQALAIKLAQAKVTGTLPKVVIPVHLCGHSCDMAAIASLAAEYGFRVIEDASH
GIGGGFQGHKLGSCYYSDITVFSFHPVKIITCAEGGMAMTNSAELAEKLRLLRSHGIVRLPQQMLRPNEGDWYYEQHELG
FNYRMTELQAALGVSQMKRIDAFVKRRNELANRYRQGLSSLCHCLESLAGSDSAWHLLIICLRDKSHRKHIFDDMRAAGI
QVHVHYFPVHLQPFYMNKGFKQGQFPVAEDFYSRILSLPLFPGLTEEQQAYVIETLSKAL

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=393, Percent_Identity=34.3511450381679, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI2367285, Length=335, Percent_Identity=33.4328358208955, Blast_Score=142, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 41728; Mature: 41728

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPYGRQDIDSTDIAAVVEVLESDFLTQGPKVPEFENAVCDYTGANFGVAVNSATSALHI
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEECCHHHHHHH
ACLALGIGQGDLVWTSPITFVASANCALYCGAEVDFVDVDPATGNMCSQALAIKLAQAKV
HHHHHCCCCCCEEEECCEEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHH
TGTLPKVVIPVHLCGHSCDMAAIASLAAEYGFRVIEDASHGIGGGFQGHKLGSCYYSDIT
CCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEECCEE
VFSFHPVKIITCAEGGMAMTNSAELAEKLRLLRSHGIVRLPQQMLRPNEGDWYYEQHELG
EEEECCEEEEEECCCCCEECCHHHHHHHHHHHHHCCCEECCHHHCCCCCCCCEEEHHHCC
FNYRMTELQAALGVSQMKRIDAFVKRRNELANRYRQGLSSLCHCLESLAGSDSAWHLLII
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
CLRDKSHRKHIFDDMRAAGIQVHVHYFPVHLQPFYMNKGFKQGQFPVAEDFYSRILSLPL
EECCCCHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
FPGLTEEQQAYVIETLSKAL
CCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIPYGRQDIDSTDIAAVVEVLESDFLTQGPKVPEFENAVCDYTGANFGVAVNSATSALHI
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEECCHHHHHHH
ACLALGIGQGDLVWTSPITFVASANCALYCGAEVDFVDVDPATGNMCSQALAIKLAQAKV
HHHHHCCCCCCEEEECCEEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHH
TGTLPKVVIPVHLCGHSCDMAAIASLAAEYGFRVIEDASHGIGGGFQGHKLGSCYYSDIT
CCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCEEECCEE
VFSFHPVKIITCAEGGMAMTNSAELAEKLRLLRSHGIVRLPQQMLRPNEGDWYYEQHELG
EEEECCEEEEEECCCCCEECCHHHHHHHHHHHHHCCCEECCHHHCCCCCCCCEEEHHHCC
FNYRMTELQAALGVSQMKRIDAFVKRRNELANRYRQGLSSLCHCLESLAGSDSAWHLLII
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
CLRDKSHRKHIFDDMRAAGIQVHVHYFPVHLQPFYMNKGFKQGQFPVAEDFYSRILSLPL
EECCCCHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
FPGLTEEQQAYVIETLSKAL
CCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]