| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is traG [H]
Identifier: 117919728
GI number: 117919728
Start: 1491078
End: 1493075
Strand: Direct
Name: traG [H]
Synonym: Shewana3_1280
Alternate gene names: 117919728
Gene position: 1491078-1493075 (Clockwise)
Preceding gene: 117919727
Following gene: 117919729
Centisome position: 29.99
GC content: 61.61
Gene sequence:
>1998_bases ATGCAAGCTCAGGGCGTACTGTTTGGGCAGATCGCTGCCGTTTTCGGCATCGTGATCGCCGGTGTGTGGGGAGCCACACA ATGGACTGCCGCCGCTCTGGGCTATCAGCTACGCCTCGGTTTGCCTTGGTTTGATCTCTTCGGCACACCGGTTTATCCCC CTTGGAAATTATTCGAATGGTGGTTCTTCTTTGGCGCTTACGCGCCGGAAGTTTTCGACACCGGTGGAGCGATTGCCGCC TGCAGTGGCCTGATGGCCGTCGTCGTTGCCATCACCATGTCGGTATGGCGTTCTCGGCAATCCAAGCGGGTCACCACCTA TGGGTCAGCACGCTGGGCCAACGCCTCCGATATCCGTAAGGCCAAACTGTCCGAGCCGATGGGTGTTTTTCTCGGGCTGC ACAACGACCAATACCTGCGCCATGAAGGTCCAGAACATGTACTCGCCTTCGCACCGACGCGCTCCGGCAAGGGTGTTGGT CTTGTCGTCCCAACGCTACTGTCTTGGCCCGCCTCTGTGGTTATCCACGACATCAAAGGTGAGAACTGGCAGCTCACTGC CGGCTGGCGTTCGCGCTTCTCACACTGCCTACTGTTCAATCCCACCGATTCGAACTCGGCCGGCTACAACCCGTTGCTGG AAGTACGGCGTGGCGCGCATGAAGTGCGCGACGTGCAAAACATTGCCGACATCCTGGTTGATCCCGAAGGCGCGCTAGAG CGTCGCAATCACTGGGAAAAAACCAGTCATGCGCTGCTAGTGGGTGCCATCCTGCATGTGCTTTATGCAGGCGAAGACAA AACGCTGTGCGGTGTCGCCAATTTCCTGTCCGATCCGGCGTGCCCGTTCGAACTGGCCCTGCACCGGATGATGACGACGA AGCACTTGGGCGATAAGCCGCATCCAGTGGTGGCTTCTGCTGCACGGGAAGTTCTCAACAAGGCAGACAATGAGCGTTCG GGTGTGCTCTCCACTGCTATGTCCTTCCTGGGGTTGTACCGTGACCCCACGGTGGCAGAAGTCACGTCACGCTGTGACTG GCGCATCGCTGATCTTATTGCGGCCGAGCACCCTGTTTCGTTGTACCTGGTGGTACCGCCATCGGACATCAGCCGGACTA AACCGCTTATCCGGCTGATCCTCAACCAGATAGGGCGTCGGCTCACGGAGTCACTCGATGGCTCTGACGGCATTCAAAGG CGCCACAAGCTGCTGCTAATGCTCGATGAGTTCCCGGCGCTTGGCCGGCTCGATTTCTTTGAGACTGCTCTGGCTTTTAT GGCCGGCTACGGCATCCGCAGCTTCCTCATCGCGCAAAGCCTGAACCAGATCGACAAGGCGTATGGGCAGAACCATTCGA TTCTGGACAACTGCCATGTACGAGTGACGTTTGCCACCAACGACGAGCGTACCGCCAAGCGCATTTCCGAGACGTTGGGC ACCGCCACCGAACTGCGCGCGCAGCGCAACTATGCCGGCCACCGGCTCGCGCCGTGGTTGGGCCATCTGATGGTGTCACG GCAGGAAACCGCACGGCCACTGCTGACGCCTGGCGAAGTGATGCAGCTTCCGCCAGACGAATCGGTGGTGATGGTGTCCA GCGTCGCGCCGATCAAGGCGAAGAAATTGCGCTACTACGCCGACGCCAACTTCAAGCGCCGCGTACTACCGCCGCCCACG CTGGCAGCCGGGCAGTACGCCGACGCGCCGCCATCGCGGCTCGACGACTGGGGCGACCTGGCGATCCCGACCGTGCCTGT GGCGCTGGCCACGGCATCCGCCGATGACCCCGGCGGCGCCGACGACGGCGGCCTGCGCCGCCAGCCCGAACTCTCCGAAA CCGTCGCCTACGACCCCGAGCCGGACGCACACGCTTCCGACCTCGCGCTGCTCGATGACGACGACCTGCCGCTGCCGCTT CCCGGCCAGCTCGACCCGGCCATGCAGCGCACGGCCCGGCTGGCTTCCCTCGACCCCAACGACGGAATCGACTTATGA
Upstream 100 bases:
>100_bases TTTGACCGGCACCGGCCTGGCACTGATCCTCGCGTTATGCGGCACATTCTCGTGTCGTGATTGACCGAAGAATTAACGCG GGAATACTGGAGGCCAGCCA
Downstream 100 bases:
>100_bases GCCAATACCGCCTCAACCTGTTCATTCAGCACGAGCACGCCAAGCGCCTGGAAGAACTGGCCGCCAAGAAAGGCGTGTCC AAGTCGTCCATCGTCGCGGC
Product: conjugal transfer coupling protein TraG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 665; Mature: 665
Protein sequence:
>665_residues MQAQGVLFGQIAAVFGIVIAGVWGATQWTAAALGYQLRLGLPWFDLFGTPVYPPWKLFEWWFFFGAYAPEVFDTGGAIAA CSGLMAVVVAITMSVWRSRQSKRVTTYGSARWANASDIRKAKLSEPMGVFLGLHNDQYLRHEGPEHVLAFAPTRSGKGVG LVVPTLLSWPASVVIHDIKGENWQLTAGWRSRFSHCLLFNPTDSNSAGYNPLLEVRRGAHEVRDVQNIADILVDPEGALE RRNHWEKTSHALLVGAILHVLYAGEDKTLCGVANFLSDPACPFELALHRMMTTKHLGDKPHPVVASAAREVLNKADNERS GVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLIAAEHPVSLYLVVPPSDISRTKPLIRLILNQIGRRLTESLDGSDGIQR RHKLLLMLDEFPALGRLDFFETALAFMAGYGIRSFLIAQSLNQIDKAYGQNHSILDNCHVRVTFATNDERTAKRISETLG TATELRAQRNYAGHRLAPWLGHLMVSRQETARPLLTPGEVMQLPPDESVVMVSSVAPIKAKKLRYYADANFKRRVLPPPT LAAGQYADAPPSRLDDWGDLAIPTVPVALATASADDPGGADDGGLRRQPELSETVAYDPEPDAHASDLALLDDDDLPLPL PGQLDPAMQRTARLASLDPNDGIDL
Sequences:
>Translated_665_residues MQAQGVLFGQIAAVFGIVIAGVWGATQWTAAALGYQLRLGLPWFDLFGTPVYPPWKLFEWWFFFGAYAPEVFDTGGAIAA CSGLMAVVVAITMSVWRSRQSKRVTTYGSARWANASDIRKAKLSEPMGVFLGLHNDQYLRHEGPEHVLAFAPTRSGKGVG LVVPTLLSWPASVVIHDIKGENWQLTAGWRSRFSHCLLFNPTDSNSAGYNPLLEVRRGAHEVRDVQNIADILVDPEGALE RRNHWEKTSHALLVGAILHVLYAGEDKTLCGVANFLSDPACPFELALHRMMTTKHLGDKPHPVVASAAREVLNKADNERS GVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLIAAEHPVSLYLVVPPSDISRTKPLIRLILNQIGRRLTESLDGSDGIQR RHKLLLMLDEFPALGRLDFFETALAFMAGYGIRSFLIAQSLNQIDKAYGQNHSILDNCHVRVTFATNDERTAKRISETLG TATELRAQRNYAGHRLAPWLGHLMVSRQETARPLLTPGEVMQLPPDESVVMVSSVAPIKAKKLRYYADANFKRRVLPPPT LAAGQYADAPPSRLDDWGDLAIPTVPVALATASADDPGGADDGGLRRQPELSETVAYDPEPDAHASDLALLDDDDLPLPL PGQLDPAMQRTARLASLDPNDGIDL >Mature_665_residues MQAQGVLFGQIAAVFGIVIAGVWGATQWTAAALGYQLRLGLPWFDLFGTPVYPPWKLFEWWFFFGAYAPEVFDTGGAIAA CSGLMAVVVAITMSVWRSRQSKRVTTYGSARWANASDIRKAKLSEPMGVFLGLHNDQYLRHEGPEHVLAFAPTRSGKGVG LVVPTLLSWPASVVIHDIKGENWQLTAGWRSRFSHCLLFNPTDSNSAGYNPLLEVRRGAHEVRDVQNIADILVDPEGALE RRNHWEKTSHALLVGAILHVLYAGEDKTLCGVANFLSDPACPFELALHRMMTTKHLGDKPHPVVASAAREVLNKADNERS GVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLIAAEHPVSLYLVVPPSDISRTKPLIRLILNQIGRRLTESLDGSDGIQR RHKLLLMLDEFPALGRLDFFETALAFMAGYGIRSFLIAQSLNQIDKAYGQNHSILDNCHVRVTFATNDERTAKRISETLG TATELRAQRNYAGHRLAPWLGHLMVSRQETARPLLTPGEVMQLPPDESVVMVSSVAPIKAKKLRYYADANFKRRVLPPPT LAAGQYADAPPSRLDDWGDLAIPTVPVALATASADDPGGADDGGLRRQPELSETVAYDPEPDAHASDLALLDDDDLPLPL PGQLDPAMQRTARLASLDPNDGIDL
Specific function: Required for conjugative transfer of plasmid RP4. Binds tightly and specifically to the relaxase traI. Can also bind to DNA without sequence specificity. May form a pore-like structure that could serve as a channel for DNA transfer [H]
COG id: COG3505
COG function: function code U; Type IV secretory pathway, VirD4 components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the virD4/traG family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003688 [H]
Pfam domain/function: PF02534 TraG [H]
EC number: NA
Molecular weight: Translated: 72940; Mature: 72940
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAQGVLFGQIAAVFGIVIAGVWGATQWTAAALGYQLRLGLPWFDLFGTPVYPPWKLFEW CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEECCCHHHHCCCCCCCHHHHHHH WFFFGAYAPEVFDTGGAIAACSGLMAVVVAITMSVWRSRQSKRVTTYGSARWANASDIRK HHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH AKLSEPMGVFLGLHNDQYLRHEGPEHVLAFAPTRSGKGVGLVVPTLLSWPASVVIHDIKG HHHCCCCEEEEECCCCCHHHCCCCCCEEEEECCCCCCCCEEHHHHHHCCCCEEEEEECCC ENWQLTAGWRSRFSHCLLFNPTDSNSAGYNPLLEVRRGAHEVRDVQNIADILVDPEGALE CCEEEECCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RRNHWEKTSHALLVGAILHVLYAGEDKTLCGVANFLSDPACPFELALHRMMTTKHLGDKP HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC HPVVASAAREVLNKADNERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLIAAEHPVS CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCCCCEE LYLVVPPSDISRTKPLIRLILNQIGRRLTESLDGSDGIQRRHKLLLMLDEFPALGRLDFF EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEECCCCCCCCHHHH ETALAFMAGYGIRSFLIAQSLNQIDKAYGQNHSILDNCHVRVTFATNDERTAKRISETLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEEECCCHHHHHHHHHHHC TATELRAQRNYAGHRLAPWLGHLMVSRQETARPLLTPGEVMQLPPDESVVMVSSVAPIKA HHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCEEECCCCCCEEEEECCCCCHH KKLRYYADANFKRRVLPPPTLAAGQYADAPPSRLDDWGDLAIPTVPVALATASADDPGGA HHEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHEEECCCCCCCCC DDGGLRRQPELSETVAYDPEPDAHASDLALLDDDDLPLPLPGQLDPAMQRTARLASLDPN CCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCC DGIDL CCCCC >Mature Secondary Structure MQAQGVLFGQIAAVFGIVIAGVWGATQWTAAALGYQLRLGLPWFDLFGTPVYPPWKLFEW CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEECCCHHHHCCCCCCCHHHHHHH WFFFGAYAPEVFDTGGAIAACSGLMAVVVAITMSVWRSRQSKRVTTYGSARWANASDIRK HHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH AKLSEPMGVFLGLHNDQYLRHEGPEHVLAFAPTRSGKGVGLVVPTLLSWPASVVIHDIKG HHHCCCCEEEEECCCCCHHHCCCCCCEEEEECCCCCCCCEEHHHHHHCCCCEEEEEECCC ENWQLTAGWRSRFSHCLLFNPTDSNSAGYNPLLEVRRGAHEVRDVQNIADILVDPEGALE CCEEEECCHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH RRNHWEKTSHALLVGAILHVLYAGEDKTLCGVANFLSDPACPFELALHRMMTTKHLGDKP HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC HPVVASAAREVLNKADNERSGVLSTAMSFLGLYRDPTVAEVTSRCDWRIADLIAAEHPVS CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHCCCCEE LYLVVPPSDISRTKPLIRLILNQIGRRLTESLDGSDGIQRRHKLLLMLDEFPALGRLDFF EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEEEECCCCCCCCHHHH ETALAFMAGYGIRSFLIAQSLNQIDKAYGQNHSILDNCHVRVTFATNDERTAKRISETLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCEEEEEEECCCHHHHHHHHHHHC TATELRAQRNYAGHRLAPWLGHLMVSRQETARPLLTPGEVMQLPPDESVVMVSSVAPIKA HHHHHHHHHCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCEEECCCCCCEEEEECCCCCHH KKLRYYADANFKRRVLPPPTLAAGQYADAPPSRLDDWGDLAIPTVPVALATASADDPGGA HHEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHEEECCCCCCCCC DDGGLRRQPELSETVAYDPEPDAHASDLALLDDDDLPLPLPGQLDPAMQRTARLASLDPN CCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCC DGIDL CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1665997; 8021214; 11976307 [H]