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The map label for this gene is yagI [H]

Identifier: 117919723

GI number: 117919723

Start: 1486964

End: 1487641

Strand: Direct

Name: yagI [H]

Synonym: Shewana3_1275

Alternate gene names: 117919723

Gene position: 1486964-1487641 (Clockwise)

Preceding gene: 117919722

Following gene: 117919724

Centisome position: 29.91

GC content: 59.29

Gene sequence:

>678_bases
ATGCTACTACTCGAAGCCATTGCAGCAGCGGGCGGCGAAGCACGTTTGGTCGATCTGTCGTGTCAACTCGGTCTAAGTAA
GAGCACTCTGCATGGCCTGCTCAATACGCTGGCGGCAATGGGCTACGTGTCACGCCACGGTACCCGCTACGTCTTGGGGC
TGCGGCTGCGCGAGTTAGCACAGCCGCTGGCCGATGCCGACGCGGCACTGCGCACGGTCTTCGCCTCCGCACTGCAAGAG
CTGGCGAATCGCAGTAACGAGACTTGCTACTTGGCCGTGCCTTGCGGGACTCGCGAATATCTCTATATCGACGCGGTGGA
AGGTAAAGGCAGTCTGCGCGTGGCCAGTCCGCGTGGACGCCGCGAAGGACTGACCACCTCGGCCATCGGGAAGATCTTTC
TGGCTCATGATTCGAACCTGGCGCGCAGTCTTCGGCGAGCGGGATCACTACCTGCCTCACTAGAGCAAGAACTGCAATCC
ATCAAAGAAACAGGCTACGCACTGGATTTGGAAGGGGCCGAGCTCGGCCTGAACTGTCTGGCGCTCCCCCTGCGGCGACA
GGGACACGTCGTCGCTGCTTTGGGTATCGCTGGTCCCTCTCAGCGGCTACGAGAACCCGTACTGTGCAAGCTAGCTACAA
CCTTTATGCGCGATATGTTCGACATAATCAAACTTTAG

Upstream 100 bases:

>100_bases
TATCGAACTTAATTGATATGCCATTTTGGAGGTGGCGCGTGCCAGTTCTCTTATGTCAATGATCAACGAAAATCGGCGCA
TCCAATCCGTGGAGCGGGCG

Downstream 100 bases:

>100_bases
CCTCTGGTTAGTCTCAGCACCTTCCCGCGACGTGGATGCGAAGAAATAATAGAAGACTCTTTTAACTTCCAAGGAGTTTT
TGTTATGTCGCTATTCCTAA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MLLLEAIAAAGGEARLVDLSCQLGLSKSTLHGLLNTLAAMGYVSRHGTRYVLGLRLRELAQPLADADAALRTVFASALQE
LANRSNETCYLAVPCGTREYLYIDAVEGKGSLRVASPRGRREGLTTSAIGKIFLAHDSNLARSLRRAGSLPASLEQELQS
IKETGYALDLEGAELGLNCLALPLRRQGHVVAALGIAGPSQRLREPVLCKLATTFMRDMFDIIKL

Sequences:

>Translated_225_residues
MLLLEAIAAAGGEARLVDLSCQLGLSKSTLHGLLNTLAAMGYVSRHGTRYVLGLRLRELAQPLADADAALRTVFASALQE
LANRSNETCYLAVPCGTREYLYIDAVEGKGSLRVASPRGRREGLTTSAIGKIFLAHDSNLARSLRRAGSLPASLEQELQS
IKETGYALDLEGAELGLNCLALPLRRQGHVVAALGIAGPSQRLREPVLCKLATTFMRDMFDIIKL
>Mature_225_residues
MLLLEAIAAAGGEARLVDLSCQLGLSKSTLHGLLNTLAAMGYVSRHGTRYVLGLRLRELAQPLADADAALRTVFASALQE
LANRSNETCYLAVPCGTREYLYIDAVEGKGSLRVASPRGRREGLTTSAIGKIFLAHDSNLARSLRRAGSLPASLEQELQS
IKETGYALDLEGAELGLNCLALPLRRQGHVVAALGIAGPSQRLREPVLCKLATTFMRDMFDIIKL

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=223, Percent_Identity=31.390134529148, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788131, Length=220, Percent_Identity=33.1818181818182, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082359, Length=218, Percent_Identity=29.8165137614679, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786715, Length=218, Percent_Identity=29.3577981651376, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 24171; Mature: 24171

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLEAIAAAGGEARLVDLSCQLGLSKSTLHGLLNTLAAMGYVSRHGTRYVLGLRLRELA
CHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
QPLADADAALRTVFASALQELANRSNETCYLAVPCGTREYLYIDAVEGKGSLRVASPRGR
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEECCCCC
REGLTTSAIGKIFLAHDSNLARSLRRAGSLPASLEQELQSIKETGYALDLEGAELGLNCL
CCCCCHHHHHEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCHHHCCHHE
ALPLRRQGHVVAALGIAGPSQRLREPVLCKLATTFMRDMFDIIKL
EECCCCCCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLLEAIAAAGGEARLVDLSCQLGLSKSTLHGLLNTLAAMGYVSRHGTRYVLGLRLRELA
CHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHH
QPLADADAALRTVFASALQELANRSNETCYLAVPCGTREYLYIDAVEGKGSLRVASPRGR
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEECCCCC
REGLTTSAIGKIFLAHDSNLARSLRRAGSLPASLEQELQSIKETGYALDLEGAELGLNCL
CCCCCHHHHHEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEECCHHHCCHHE
ALPLRRQGHVVAALGIAGPSQRLREPVLCKLATTFMRDMFDIIKL
EECCCCCCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]