Click here to switch to the map view.

The map label for this gene is yfjD [C]

Identifier: 117919674

GI number: 117919674

Start: 1428213

End: 1429304

Strand: Reverse

Name: yfjD [C]

Synonym: Shewana3_1225

Alternate gene names: 117919674

Gene position: 1429304-1428213 (Counterclockwise)

Preceding gene: 117919683

Following gene: 117919673

Centisome position: 28.75

GC content: 50.64

Gene sequence:

>1092_bases
ATGTTAACCCTCATCATTATAGTGCTTGTCGCTGTCGGAGTTTCTTTTCTGTGCAGTGTATTCGAAGCAGTGTTGCTCTC
GGTTACCCCTAGTTATATCGCCTCGCTCGAACAAACTGACAGTGCCGCGGCCGCCCGGTTGCGTAAACTAAAAGAAAACA
TCGAAGCGCCTCTCGTGTCTATTTTGACCCTAAACACCATTGCCCACACTGTGGGTGCCGCCGTTGCAGGTGCGCAAGCG
GCCAAGGTCTTTGGTGATGACATGCTCGGCGTGTTCTCCGGAGTGTTAACTTTTATCATCCTATTCTTCTCAGAGATTAT
TCCGAAATCTGTGGGAGCCAATCACTGGCGCCGTTTAGCCCCGAGTGTATCGATTGCCATCACTTGGATGAAGCGTGTCA
CTAAGCCGCTGATTTGGATGTCGCAACAGGTGACTCGCCTGCTAGGTAAAGGGGAAGAAGGTCAGTACATTCGCCAAGAA
ATGAGCGCCATGGCCAAGATTGGTCACGAATCCGGTGAGTTAGACGAGCAAGAGTCTAAAATTTTGACCCAAATGCTCAA
GGTGCGTGACGTGCCTGTGACGGCGATTATGACGCCGCGTACCGTGATGTTCTCGTTACCCGTTTCACTGACGCAAAATG
AGTTTGTGCAAGAATATCGCGACAAACCTTTTACCCGTATTCCGGTATACGATCAGGACCACGACGACATTATCGGTTAC
ATCACCCGTACCGATGTTTTGCTGGCTGAGCGTTACACCCCTGATGCACCGATTGGTGAACTCAAGCGCAGCCTATTTGT
GGTGCCCGAGACGGCTAAAATCCTGCCGTTATTCGAGCGGATGATTAAACGCAATACCCAAATTGCGATGGTGGTTGACG
AATACGGCAGTAGCCAAGGTATTGTGACCCAAGAAGACATTATCGAATCGCTACTTGGCTTAGAGATTGTCGATGTGAAT
GACCCTGCGACCGATATGCAGCAATTGGCCCGTAAACTCTGGACCAAACGCATGAAGCAAAAAGGCATTCGTCTCTCCGA
TGATGGCGACTTCGAAGCCGCCGCCGAAGATGACGAGGCGCGCTCGGGTTAA

Upstream 100 bases:

>100_bases
TACAGACGCAGAAAAATTTTAGCCAGCAACTCCACACTCCTATGCTAGAATCGGCGTGGGTCAATGTTGGCCTAAATTAT
GGAGTTGTAATACCACCTAT

Downstream 100 bases:

>100_bases
TGACATTATTTAGTCATTGTTAAAGTAAAGGGAGCTTGGCTCCCTTTCTTGTTTTTGGGGAGAAGGTTATAATCTCCCGC
CGTAAAAGAGGTAGGTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MLTLIIIVLVAVGVSFLCSVFEAVLLSVTPSYIASLEQTDSAAAARLRKLKENIEAPLVSILTLNTIAHTVGAAVAGAQA
AKVFGDDMLGVFSGVLTFIILFFSEIIPKSVGANHWRRLAPSVSIAITWMKRVTKPLIWMSQQVTRLLGKGEEGQYIRQE
MSAMAKIGHESGELDEQESKILTQMLKVRDVPVTAIMTPRTVMFSLPVSLTQNEFVQEYRDKPFTRIPVYDQDHDDIIGY
ITRTDVLLAERYTPDAPIGELKRSLFVVPETAKILPLFERMIKRNTQIAMVVDEYGSSQGIVTQEDIIESLLGLEIVDVN
DPATDMQQLARKLWTKRMKQKGIRLSDDGDFEAAAEDDEARSG

Sequences:

>Translated_363_residues
MLTLIIIVLVAVGVSFLCSVFEAVLLSVTPSYIASLEQTDSAAAARLRKLKENIEAPLVSILTLNTIAHTVGAAVAGAQA
AKVFGDDMLGVFSGVLTFIILFFSEIIPKSVGANHWRRLAPSVSIAITWMKRVTKPLIWMSQQVTRLLGKGEEGQYIRQE
MSAMAKIGHESGELDEQESKILTQMLKVRDVPVTAIMTPRTVMFSLPVSLTQNEFVQEYRDKPFTRIPVYDQDHDDIIGY
ITRTDVLLAERYTPDAPIGELKRSLFVVPETAKILPLFERMIKRNTQIAMVVDEYGSSQGIVTQEDIIESLLGLEIVDVN
DPATDMQQLARKLWTKRMKQKGIRLSDDGDFEAAAEDDEARSG
>Mature_363_residues
MLTLIIIVLVAVGVSFLCSVFEAVLLSVTPSYIASLEQTDSAAAARLRKLKENIEAPLVSILTLNTIAHTVGAAVAGAQA
AKVFGDDMLGVFSGVLTFIILFFSEIIPKSVGANHWRRLAPSVSIAITWMKRVTKPLIWMSQQVTRLLGKGEEGQYIRQE
MSAMAKIGHESGELDEQESKILTQMLKVRDVPVTAIMTPRTVMFSLPVSLTQNEFVQEYRDKPFTRIPVYDQDHDDIIGY
ITRTDVLLAERYTPDAPIGELKRSLFVVPETAKILPLFERMIKRNTQIAMVVDEYGSSQGIVTQEDIIESLLGLEIVDVN
DPATDMQQLARKLWTKRMKQKGIRLSDDGDFEAAAEDDEARSG

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=356, Percent_Identity=25.561797752809, Blast_Score=102, Evalue=4e-22,
Organism=Escherichia coli, GI145693175, Length=308, Percent_Identity=24.025974025974, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790664, Length=336, Percent_Identity=22.0238095238095, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786879, Length=182, Percent_Identity=29.1208791208791, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082033, Length=199, Percent_Identity=29.1457286432161, Blast_Score=72, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6324512, Length=286, Percent_Identity=25.5244755244755, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 40301; Mature: 40301

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure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CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]