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The map label for this gene is yhdW [H]

Identifier: 117919038

GI number: 117919038

Start: 684989

End: 685711

Strand: Reverse

Name: yhdW [H]

Synonym: Shewana3_0585

Alternate gene names: 117919038

Gene position: 685711-684989 (Counterclockwise)

Preceding gene: 117919039

Following gene: 117919036

Centisome position: 13.79

GC content: 50.76

Gene sequence:

>723_bases
ATGCTTATTTTTGCTCACCGTGGTGCCAGCGGTTATGTGGCGGAAAATACCTTAGCCGCCATGGCTAAGGCCATAGAGTT
AGGCGCCACAGCCATTGAGCTGGATGTGCATAATGTTGAAGGTGAGTTAGTGGTATTTCACGACCGCAGACTCGACAGTA
AAAGCTCGGGCCAAGGCATCATCCATTTGGTCAACAAAGGATATCTGGACACAGTCACAGTCAAAGGCGAGCCCATTCCC
ACCCTTTGGCAAGTGCTCGAACTGGTTGCTGGCCGCGCCACAATCAACATCGAACTGAAAGGGGTGAATACGGTAGCGCC
GCTACTCACGCTTTATCCTAAAGCTATTACCGAACTGGGGTTCAGCGCGGAGCAATTGTTGATCTCATCCTTCAATCATC
CCTATTTACAACAAGTTAAACAGGCGCTGCCACAGGCATTGGTGGCCCCCTTACTTGCCAGTATTCCCCTCGATGGTGCT
GCGGTCGTGAGCGAGCTAAACGCCTATTCCCTGCATTTAGACGTGAGTTTTATCAGCAAGGCCCTAGTGGATGATGCCCA
TCATAGAGGTGCTAAGGTATATGTTTACACCGTCGATTATAGCGATGATATCCATGCCCTTCAGCAGTTGGGTGTCGATG
GGATCTTTAGCAATTTCCCCGACCGCGCCATGCAGGCGCTGTTGCAACCCACGAATACGGATTACAGCGGCTACTTCGAA
TAA

Upstream 100 bases:

>100_bases
CAATTTAGAACTCGCCTATCCGCAAATGGAAATCCATCTTAAAAATGGCCAAACTCGCGATCAGGTCGGCATAATCCGCA
GTTAATAGGACGAAAATCAG

Downstream 100 bases:

>100_bases
TCCCTTGGCGCGGATTTAGCGGCTTAGGCTTGGCTATTTCGCTGCGCCCAATAGCCGATAAAAATAAACATGGCGACGAT
CAGCAAGAACATCCAATGGG

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MLIFAHRGASGYVAENTLAAMAKAIELGATAIELDVHNVEGELVVFHDRRLDSKSSGQGIIHLVNKGYLDTVTVKGEPIP
TLWQVLELVAGRATINIELKGVNTVAPLLTLYPKAITELGFSAEQLLISSFNHPYLQQVKQALPQALVAPLLASIPLDGA
AVVSELNAYSLHLDVSFISKALVDDAHHRGAKVYVYTVDYSDDIHALQQLGVDGIFSNFPDRAMQALLQPTNTDYSGYFE

Sequences:

>Translated_240_residues
MLIFAHRGASGYVAENTLAAMAKAIELGATAIELDVHNVEGELVVFHDRRLDSKSSGQGIIHLVNKGYLDTVTVKGEPIP
TLWQVLELVAGRATINIELKGVNTVAPLLTLYPKAITELGFSAEQLLISSFNHPYLQQVKQALPQALVAPLLASIPLDGA
AVVSELNAYSLHLDVSFISKALVDDAHHRGAKVYVYTVDYSDDIHALQQLGVDGIFSNFPDRAMQALLQPTNTDYSGYFE
>Mature_240_residues
MLIFAHRGASGYVAENTLAAMAKAIELGATAIELDVHNVEGELVVFHDRRLDSKSSGQGIIHLVNKGYLDTVTVKGEPIP
TLWQVLELVAGRATINIELKGVNTVAPLLTLYPKAITELGFSAEQLLISSFNHPYLQQVKQALPQALVAPLLASIPLDGA
AVVSELNAYSLHLDVSFISKALVDDAHHRGAKVYVYTVDYSDDIHALQQLGVDGIFSNFPDRAMQALLQPTNTDYSGYFE

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=230, Percent_Identity=30.8695652173913, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 26038; Mature: 26038

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIFAHRGASGYVAENTLAAMAKAIELGATAIELDVHNVEGELVVFHDRRLDSKSSGQGI
CEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCE
IHLVNKGYLDTVTVKGEPIPTLWQVLELVAGRATINIELKGVNTVAPLLTLYPKAITELG
EEEECCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHC
FSAEQLLISSFNHPYLQQVKQALPQALVAPLLASIPLDGAAVVSELNAYSLHLDVSFISK
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEHHHHHH
ALVDDAHHRGAKVYVYTVDYSDDIHALQQLGVDGIFSNFPDRAMQALLQPTNTDYSGYFE
HHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MLIFAHRGASGYVAENTLAAMAKAIELGATAIELDVHNVEGELVVFHDRRLDSKSSGQGI
CEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCE
IHLVNKGYLDTVTVKGEPIPTLWQVLELVAGRATINIELKGVNTVAPLLTLYPKAITELG
EEEECCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHHC
FSAEQLLISSFNHPYLQQVKQALPQALVAPLLASIPLDGAAVVSELNAYSLHLDVSFISK
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEEHHHHHH
ALVDDAHHRGAKVYVYTVDYSDDIHALQQLGVDGIFSNFPDRAMQALLQPTNTDYSGYFE
HHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]