Click here to switch to the map view.

The map label for this gene is yiaN [C]

Identifier: 117918912

GI number: 117918912

Start: 530394

End: 532427

Strand: Reverse

Name: yiaN [C]

Synonym: Shewana3_0456

Alternate gene names: 117918912

Gene position: 532427-530394 (Counterclockwise)

Preceding gene: 117918913

Following gene: 117918911

Centisome position: 10.71

GC content: 52.95

Gene sequence:

>2034_bases
ATGAGCGATTCCGAACAAGGACTAGGCGCTAAGACCAGTGACTGGCCCAAGGCACTGTTTTATACGGCGCTAGTTTTCTC
CATTTTTCAAATCATTACCGCCGCCTTTCATCCCGTATCGACCCAAGTATTGCGGGCAACCCATGTGGGCTTTTTACTGT
TAATCGTATTTTTAAGTTATCCGGCGGTGGGTAAGTCTCGCCCTTGGCAACCCTTAGGCTGGGTGCTTGGCCTTGCGGGC
ATGGCAACAGCCGCCTACCAATGGTTTTTTGAGGCCGACCTGATCCAGCGCTCCGGTGAACTCACCGATGCCGATATGGT
GATAGGCGTAGTGTTGATTGTTTTAGTGTTTGAAGCCGCGCGGCGGGTGATGGGCTGGGCACTGCCAATTATCTGCTGTA
TTTTCTTGGCCTACGGCTTATTCGGCCAATATCTCCCCGGTGACTTAATGCACCGTGGCTACGGCGTTGACCAAATTATC
AATCAGTTATCCTTCGGTACCGAAGGGCTCTACGGCACACCAACCTATGTGTCGGCCACCTATATCTTTCTGTTTATCTT
GTTTGGCGCCTTTTTAGAGCAGGCGGGGATGATCCGTCTGTTTACCGATTTTGCGATGGGATTATTCGGCCATAAACTCG
GCGGCCCGGCGAAAGTGGCCGTGGTTTCCTCGGCGATGATGGGCACAATCACAGGCTCAGGAGTAGCCAACGTGGTGACC
ACGGGGCAATTTACCATTCCCTTGATGAAACGCTTTGGCTACCGCCCCGCCTTTGCTGGCGGTGTAGAAGCCACCTCCAG
TATGGGTAGCCAGATTATGCCACCCATCATGGGCGCGGTGGCCTTTATCATGGCCGAAACCATTAACGTGCCGTTTATTG
AAATCGCCAAAGCGGCGTTAATCCCCGCATTATTGTATTTCAGCTCAGTGTTCTGGATGGTGCATCTGGAGGCAAAACGC
GCCAATCTCTGCGGCTTACCCAAGGATCAATGTCCCGATCCCTGGGCGGCAGTGAAGGAGCGCTGGTATCTGCTGATCCC
GCTGTTTATTTTGATTTACTTGCTGTTTTCGGGTCGTACGCCGCTGTTCTCTGGCATGGTCGGTTTAGCACTGACCTCGA
TAGTGATCTTAGGCTCTGCGATTGTGCTGCGCCTGCCTTCTAATGCCATGCGCTTCGCCTTTTGGATCGCCCTTGGGGTG
TTGTGTGCTGGCTTCTTCCAGATGGGTATCGCCGTCGTCTTTGGGGTTATCGCCTTACTGGTTGCTGTCTGCTGGTTTAT
CAAAGGGGGCAAAGATACCCTGACCATCTGCCTACACGCCTTAGTCGATGGCGCTCGCCATGCGGTGCCTGTGGGGATAG
CCTGCGCCCTGGTTGGGGTGATTATCGGTATCGTCTCGCTGACGGGCATTGCCTCAACCTTCGCCAGTTACATCCTCGCA
GTGGGTCAAGATAACCTCTTCCTCTCGCTGGTGTTAACTATGCTGACTTGTATGGTGTTAGGTATGGGGATCCCGAGTAT
TCCTAACTACATCATTACCAGCTCGATTGCCGCACCTGCCCTGCTGGACTTAGGTGTACCGCTGATCGTCTCCCATATGT
TTGTGTTTTACTTTGGGATTATGGCCGACCTCACGCCTCCCGTCGCCTTGGCCTGCTTTGCCGCAGCGCCAATAGCAAAA
GAATCGGGGCTAAAGATCAGTCTATGGGCGATTCGCATCGCCATCGCAGGCTTTGTGATCCCCTTTATGGCGGTTTACGA
ACCAGCGCTTATGCTACAAAGTGATAGCTGGCTTGCCATCGGCTTTGTGATGTTAAAAGCCACCGTAGGCATAGGTATCT
GGGGCGTGATCTTCACCGGTTTCTTACTGCAAAAACTCTATTGGTGGGAACGCGTTATCGGCTTCCTCGCAGGAGCCAGT
TTAATCCTTGCGACACCGCTCAGTGATGAAATCGGTTTTGGACTGGCGCTACTCTTTATCGTGCAGCACAGCCTAAGAGT
GCGCAAACTGAAACGTCTTGCGGAGCAGGGGTAA

Upstream 100 bases:

>100_bases
ACCTCAATCTGTGCGACCCATTTTTCACCTAAGCACTTGAGTGATAGCGTCACTCAAGTGCTGCGTCGCCCTCTGTAGTC
TAATGCTGTGAGGCATAAAT

Downstream 100 bases:

>100_bases
GGTTTTGAACTTATGCAAAGGTAAGGCAATAAGATGCTAGGTCTATGTTTAGGCCTAGCCGGCACACTGTGGGCACAAGT
GCCTACAGAGCAGTTCACCC

Product: TRAP transporter, 4TM/12TM fusion protein

Products: NA

Alternate protein names: Trap Transporter 4tm/12tm Fusion Protein; TRAP Transporter; TRAP-Type Transport System Fused Permease Component; TRAP-Type Transporter 4TM/12TM Fusion Protein; C4-Dicarboxylate Anaerobic Carrier; TRAP-T Family Transporter With Fused DctQ/DctM Subunits; TRAP-Type Transport System Permease Component; Inner Membrane Protein; Trap Family Transporter; TRAP-Type Transporter Permease Component; Permease; TRAP-Type Transport System Permease; TRAP-Type Transporter Fused Permease Components; TRAP Transporter Large Permease; TRAP Transport System Permease Component; TRAP Transporter 4TM/12TM Fusion Family; Trap Transporter; C4-Dicarboxylate Transporter; TRAP Type Transporter Protein; TRAP-T Family Transporter Fused Inner Membrane Subunits; TRAP Transporter Transmembrane Protein; TRAP Transporter Permease; Integral Membrane Protein; N-Carbamoyl-L-Amino Acid Hydrolase; TRAP-Type Transport System Fused Permease Components; 4TM/12TM TRAP Transporter; TRAP Transporter Membrane-Spanning Component; TRAP-Type Transport System

Number of amino acids: Translated: 677; Mature: 676

Protein sequence:

>677_residues
MSDSEQGLGAKTSDWPKALFYTALVFSIFQIITAAFHPVSTQVLRATHVGFLLLIVFLSYPAVGKSRPWQPLGWVLGLAG
MATAAYQWFFEADLIQRSGELTDADMVIGVVLIVLVFEAARRVMGWALPIICCIFLAYGLFGQYLPGDLMHRGYGVDQII
NQLSFGTEGLYGTPTYVSATYIFLFILFGAFLEQAGMIRLFTDFAMGLFGHKLGGPAKVAVVSSAMMGTITGSGVANVVT
TGQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPIMGAVAFIMAETINVPFIEIAKAALIPALLYFSSVFWMVHLEAKR
ANLCGLPKDQCPDPWAAVKERWYLLIPLFILIYLLFSGRTPLFSGMVGLALTSIVILGSAIVLRLPSNAMRFAFWIALGV
LCAGFFQMGIAVVFGVIALLVAVCWFIKGGKDTLTICLHALVDGARHAVPVGIACALVGVIIGIVSLTGIASTFASYILA
VGQDNLFLSLVLTMLTCMVLGMGIPSIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIMADLTPPVALACFAAAPIAK
ESGLKISLWAIRIAIAGFVIPFMAVYEPALMLQSDSWLAIGFVMLKATVGIGIWGVIFTGFLLQKLYWWERVIGFLAGAS
LILATPLSDEIGFGLALLFIVQHSLRVRKLKRLAEQG

Sequences:

>Translated_677_residues
MSDSEQGLGAKTSDWPKALFYTALVFSIFQIITAAFHPVSTQVLRATHVGFLLLIVFLSYPAVGKSRPWQPLGWVLGLAG
MATAAYQWFFEADLIQRSGELTDADMVIGVVLIVLVFEAARRVMGWALPIICCIFLAYGLFGQYLPGDLMHRGYGVDQII
NQLSFGTEGLYGTPTYVSATYIFLFILFGAFLEQAGMIRLFTDFAMGLFGHKLGGPAKVAVVSSAMMGTITGSGVANVVT
TGQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPIMGAVAFIMAETINVPFIEIAKAALIPALLYFSSVFWMVHLEAKR
ANLCGLPKDQCPDPWAAVKERWYLLIPLFILIYLLFSGRTPLFSGMVGLALTSIVILGSAIVLRLPSNAMRFAFWIALGV
LCAGFFQMGIAVVFGVIALLVAVCWFIKGGKDTLTICLHALVDGARHAVPVGIACALVGVIIGIVSLTGIASTFASYILA
VGQDNLFLSLVLTMLTCMVLGMGIPSIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIMADLTPPVALACFAAAPIAK
ESGLKISLWAIRIAIAGFVIPFMAVYEPALMLQSDSWLAIGFVMLKATVGIGIWGVIFTGFLLQKLYWWERVIGFLAGAS
LILATPLSDEIGFGLALLFIVQHSLRVRKLKRLAEQG
>Mature_676_residues
SDSEQGLGAKTSDWPKALFYTALVFSIFQIITAAFHPVSTQVLRATHVGFLLLIVFLSYPAVGKSRPWQPLGWVLGLAGM
ATAAYQWFFEADLIQRSGELTDADMVIGVVLIVLVFEAARRVMGWALPIICCIFLAYGLFGQYLPGDLMHRGYGVDQIIN
QLSFGTEGLYGTPTYVSATYIFLFILFGAFLEQAGMIRLFTDFAMGLFGHKLGGPAKVAVVSSAMMGTITGSGVANVVTT
GQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPIMGAVAFIMAETINVPFIEIAKAALIPALLYFSSVFWMVHLEAKRA
NLCGLPKDQCPDPWAAVKERWYLLIPLFILIYLLFSGRTPLFSGMVGLALTSIVILGSAIVLRLPSNAMRFAFWIALGVL
CAGFFQMGIAVVFGVIALLVAVCWFIKGGKDTLTICLHALVDGARHAVPVGIACALVGVIIGIVSLTGIASTFASYILAV
GQDNLFLSLVLTMLTCMVLGMGIPSIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIMADLTPPVALACFAAAPIAKE
SGLKISLWAIRIAIAGFVIPFMAVYEPALMLQSDSWLAIGFVMLKATVGIGIWGVIFTGFLLQKLYWWERVIGFLAGASL
ILATPLSDEIGFGLALLFIVQHSLRVRKLKRLAEQG

Specific function: Unknown

COG id: COG4666

COG function: function code R; TRAP-type uncharacterized transport system, fused permease components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72910; Mature: 72779

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDSEQGLGAKTSDWPKALFYTALVFSIFQIITAAFHPVSTQVLRATHVGFLLLIVFLSY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC
PAVGKSRPWQPLGWVLGLAGMATAAYQWFFEADLIQRSGELTDADMVIGVVLIVLVFEAA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
RRVMGWALPIICCIFLAYGLFGQYLPGDLMHRGYGVDQIINQLSFGTEGLYGTPTYVSAT
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHH
YIFLFILFGAFLEQAGMIRLFTDFAMGLFGHKLGGPAKVAVVSSAMMGTITGSGVANVVT
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHC
TGQFTIPLMKRFGYRPAFAGGVEATSSMGSQIMPPIMGAVAFIMAETINVPFIEIAKAAL
CCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
IPALLYFSSVFWMVHLEAKRANLCGLPKDQCPDPWAAVKERWYLLIPLFILIYLLFSGRT
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLFSGMVGLALTSIVILGSAIVLRLPSNAMRFAFWIALGVLCAGFFQMGIAVVFGVIALL
HHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAVCWFIKGGKDTLTICLHALVDGARHAVPVGIACALVGVIIGIVSLTGIASTFASYILA
HHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGQDNLFLSLVLTMLTCMVLGMGIPSIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGI
HCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
MADLTPPVALACFAAAPIAKESGLKISLWAIRIAIAGFVIPFMAVYEPALMLQSDSWLAI
HHHCCHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCHHHHEECCCHHHH
GFVMLKATVGIGIWGVIFTGFLLQKLYWWERVIGFLAGASLILATPLSDEIGFGLALLFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHH
VQHSLRVRKLKRLAEQG
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA