Click here to switch to the map view.

The map label for this gene is yqiC [H]

Identifier: 117918827

GI number: 117918827

Start: 406060

End: 406314

Strand: Reverse

Name: yqiC [H]

Synonym: Shewana3_0370

Alternate gene names: 117918827

Gene position: 406314-406060 (Counterclockwise)

Preceding gene: 117918828

Following gene: 117918826

Centisome position: 8.17

GC content: 47.06

Gene sequence:

>255_bases
ATGATTAACCCCAAGAAAATCGAAGAAATGGCGAAGCAACTGAGCGATAGCCTGCCCAGCGGCCTGAAGCAATTTGCCGG
CGAATTTGAAGAGCGCAGCAAGCAAGTGCTGCAAAATCAATTGCTCAAGTTAGATCTAGTTTCCCGTGAAGAATTTGAAG
TACAGCAGCATGTACTACTGAAAACCCGCGAAAAGTTAGAAGCCCTACAGGCGCAAGTTAACGAGCTTGAGAAAAAGCTG
AACGCCGCGGACTAA

Upstream 100 bases:

>100_bases
CCTACGTCCCTTAAGACGTAGGTTTTGCAAGGCGGTTTTCTTTTGAAAGCCAACGTACTAGGTTACAATCCACCCATTCA
GTAAAGAGGCGGACAAGATT

Downstream 100 bases:

>100_bases
CTTATAATGCATGTTTGAAAGAGCACAGTTAGCGATAGCGCAGCTGTGCTTTTTTGTTTTTAACACTTCAAGCATTGAGT
CACTTAGGGAAATCATGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MINPKKIEEMAKQLSDSLPSGLKQFAGEFEERSKQVLQNQLLKLDLVSREEFEVQQHVLLKTREKLEALQAQVNELEKKL
NAAD

Sequences:

>Translated_84_residues
MINPKKIEEMAKQLSDSLPSGLKQFAGEFEERSKQVLQNQLLKLDLVSREEFEVQQHVLLKTREKLEALQAQVNELEKKL
NAAD
>Mature_84_residues
MINPKKIEEMAKQLSDSLPSGLKQFAGEFEERSKQVLQNQLLKLDLVSREEFEVQQHVLLKTREKLEALQAQVNELEKKL
NAAD

Specific function: Unknown

COG id: COG2960

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082201, Length=79, Percent_Identity=53.1645569620253, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007475 [H]

Pfam domain/function: PF04380 DUF526 [H]

EC number: NA

Molecular weight: Translated: 9691; Mature: 9691

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINPKKIEEMAKQLSDSLPSGLKQFAGEFEERSKQVLQNQLLKLDLVSREEFEVQQHVLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTREKLEALQAQVNELEKKLNAAD
HHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MINPKKIEEMAKQLSDSLPSGLKQFAGEFEERSKQVLQNQLLKLDLVSREEFEVQQHVLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTREKLEALQAQVNELEKKLNAAD
HHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9868784 [H]