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The map label for this gene is yjfR [C]

Identifier: 117918748

GI number: 117918748

Start: 323374

End: 324492

Strand: Reverse

Name: yjfR [C]

Synonym: Shewana3_0291

Alternate gene names: 117918748

Gene position: 324492-323374 (Counterclockwise)

Preceding gene: 117918750

Following gene: 117918747

Centisome position: 6.53

GC content: 50.58

Gene sequence:

>1119_bases
ATGCGACTCAAAATCACCTTGGCCCTACTGCTACTCGGGAGCGTTATTATGACCTTAGATCCCAATATCATTGAAACTAG
CCCATCGGAGGGTCAACGCTTTCGTAATGAAGCGCCAAATGCTCACAGTGGTGAAGGTAATCTACCAGCCATTTTATGGC
GTTATGTCACTGAACGCATTCCCGACAAGAGTCCAAACCAGCCGCTACCGATTCAGTCAATGCGGCTGCCTGCCACGGCT
GATGACACACCTATGCTGTATAAAATCAGCCACTCGACCGTGCTGTTACAGCTAAACGGCCAGTATTGGTTAACCGATCC
TGTGTTTTCAAAGCGCGCCTCACCTAGCCAATGGTTTGGCCCAAAACGCTTCCATACTCTGCCGATTGAGCTCGAAAACA
TTCCGGCACTCGCTGGGATTATCTTGTCCCACGATCATTACGATCACTTAGACAAGCAGAGCGTGTTAGCACTCGCTGCG
CGCACTCAGAAGTTTATTGTGCCACTGGGCGTCGATAAGCATCTTATTGGTTGGGGTATTCCTAAGGAAAAAATTGTCGC
CCTCAACTGGTGGCAAGCAACCGAGCACCAAGGAGTGCGCTTTACCGCCACCCCAGCGCAACATTTCTCGGGCCGTGGGC
TTAGGGATAAGAATCAAACCCTGTGGGCCTCTTGGGCGATTCAATCCCCTGAATTAAACATCTTTTTCAGTGGTGACTCT
GGGTATTTTGATGGCTTTAAAAAAATTGGCGATAAACTGGGCCCCTTCGACCTCACCTTAGTCGAAACTGGCGCCTACGA
TGAGATGTGGGCCGATATCCACATGCAACCTGAGCAATCGCTGCGGGCGCATTTAGATCTACAAGGCCAATACCTTATCC
CAATCCACAACAGCAGTTTCGACCTAGCGCTGCACAGTTGGTATGAACCCTTAGAGCGGATCGCCGCAGCGGCGAAGGCC
TATGCCGTTCCTCTGCTGACCCCTGAGTTTGGTCAAGGGATTAATCTCAATGAGTTAGCCCACAGCCCAGCGCTCAATCA
AGGGTGGTGGAAGTCATACTTACCCAAAGACAGGCCCGAGTTTGAAGTGGTTCCAGTCAAACTTGCCTCCAACAAATAA

Upstream 100 bases:

>100_bases
TACGCCATCAAAATATTTGCCGATATTTTACACTATTGAGTTTACTTTTGCACAACCCTGAGTAAACTACACTGTGTAGT
TTACTTTTATCAAGTTTACA

Downstream 100 bases:

>100_bases
TCATAGCCGATGCCTCCTTAGCGGCACTTAACCATTGCGCCGCTAAGGATCTCCCCACCAATAGCCCAACGAAAGTATTA
AGCTCCTGGCAAACCGCCAG

Product: Zn-dependent hydrolase of the beta-lactamase fold

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MRLKITLALLLLGSVIMTLDPNIIETSPSEGQRFRNEAPNAHSGEGNLPAILWRYVTERIPDKSPNQPLPIQSMRLPATA
DDTPMLYKISHSTVLLQLNGQYWLTDPVFSKRASPSQWFGPKRFHTLPIELENIPALAGIILSHDHYDHLDKQSVLALAA
RTQKFIVPLGVDKHLIGWGIPKEKIVALNWWQATEHQGVRFTATPAQHFSGRGLRDKNQTLWASWAIQSPELNIFFSGDS
GYFDGFKKIGDKLGPFDLTLVETGAYDEMWADIHMQPEQSLRAHLDLQGQYLIPIHNSSFDLALHSWYEPLERIAAAAKA
YAVPLLTPEFGQGINLNELAHSPALNQGWWKSYLPKDRPEFEVVPVKLASNK

Sequences:

>Translated_372_residues
MRLKITLALLLLGSVIMTLDPNIIETSPSEGQRFRNEAPNAHSGEGNLPAILWRYVTERIPDKSPNQPLPIQSMRLPATA
DDTPMLYKISHSTVLLQLNGQYWLTDPVFSKRASPSQWFGPKRFHTLPIELENIPALAGIILSHDHYDHLDKQSVLALAA
RTQKFIVPLGVDKHLIGWGIPKEKIVALNWWQATEHQGVRFTATPAQHFSGRGLRDKNQTLWASWAIQSPELNIFFSGDS
GYFDGFKKIGDKLGPFDLTLVETGAYDEMWADIHMQPEQSLRAHLDLQGQYLIPIHNSSFDLALHSWYEPLERIAAAAKA
YAVPLLTPEFGQGINLNELAHSPALNQGWWKSYLPKDRPEFEVVPVKLASNK
>Mature_372_residues
MRLKITLALLLLGSVIMTLDPNIIETSPSEGQRFRNEAPNAHSGEGNLPAILWRYVTERIPDKSPNQPLPIQSMRLPATA
DDTPMLYKISHSTVLLQLNGQYWLTDPVFSKRASPSQWFGPKRFHTLPIELENIPALAGIILSHDHYDHLDKQSVLALAA
RTQKFIVPLGVDKHLIGWGIPKEKIVALNWWQATEHQGVRFTATPAQHFSGRGLRDKNQTLWASWAIQSPELNIFFSGDS
GYFDGFKKIGDKLGPFDLTLVETGAYDEMWADIHMQPEQSLRAHLDLQGQYLIPIHNSSFDLALHSWYEPLERIAAAAKA
YAVPLLTPEFGQGINLNELAHSPALNQGWWKSYLPKDRPEFEVVPVKLASNK

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To K.pneumoniae romA [H]

Homologues:

Organism=Homo sapiens, GI170932483, Length=243, Percent_Identity=38.6831275720165, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI170932481, Length=243, Percent_Identity=38.6831275720165, Blast_Score=189, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI25148824, Length=343, Percent_Identity=33.8192419825073, Blast_Score=168, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI17543102, Length=338, Percent_Identity=33.4319526627219, Blast_Score=167, Evalue=8e-42,
Organism=Caenorhabditis elegans, GI17543100, Length=308, Percent_Identity=35.0649350649351, Blast_Score=167, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17543104, Length=245, Percent_Identity=35.9183673469388, Blast_Score=156, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6325154, Length=246, Percent_Identity=30.4878048780488, Blast_Score=110, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41900; Mature: 41900

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLKITLALLLLGSVIMTLDPNIIETSPSEGQRFRNEAPNAHSGEGNLPAILWRYVTERI
CEEEEEHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
PDKSPNQPLPIQSMRLPATADDTPMLYKISHSTVLLQLNGQYWLTDPVFSKRASPSQWFG
CCCCCCCCCCCCCEECCCCCCCCCEEEEEECCEEEEEECCCEEEECHHHHCCCCCCCCCC
PKRFHTLPIELENIPALAGIILSHDHYDHLDKQSVLALAARTQKFIVPLGVDKHLIGWGI
CCCEEEEEEEECCCCCEEHEEECCCCHHHCCHHHHHHHHHCCCEEEEEECCCCEEEECCC
PKEKIVALNWWQATEHQGVRFTATPAQHFSGRGLRDKNQTLWASWAIQSPELNIFFSGDS
CHHHEEEEEEEECCCCCCEEEEECCHHHCCCCCCCCCCCEEEEEEEECCCCEEEEECCCC
GYFDGFKKIGDKLGPFDLTLVETGAYDEMWADIHMQPEQSLRAHLDLQGQYLIPIHNSSF
CHHHHHHHHHHCCCCEEEEEEECCCCHHHHHEEECCCHHHHHHEECCCCCEEEEEECCCC
DLALHSWYEPLERIAAAAKAYAVPLLTPEFGQGINLNELAHSPALNQGWWKSYLPKDRPE
CCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCC
FEVVPVKLASNK
EEEEEEEECCCC
>Mature Secondary Structure
MRLKITLALLLLGSVIMTLDPNIIETSPSEGQRFRNEAPNAHSGEGNLPAILWRYVTERI
CEEEEEHHHHHHHHHHHHCCCCEEECCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
PDKSPNQPLPIQSMRLPATADDTPMLYKISHSTVLLQLNGQYWLTDPVFSKRASPSQWFG
CCCCCCCCCCCCCEECCCCCCCCCEEEEEECCEEEEEECCCEEEECHHHHCCCCCCCCCC
PKRFHTLPIELENIPALAGIILSHDHYDHLDKQSVLALAARTQKFIVPLGVDKHLIGWGI
CCCEEEEEEEECCCCCEEHEEECCCCHHHCCHHHHHHHHHCCCEEEEEECCCCEEEECCC
PKEKIVALNWWQATEHQGVRFTATPAQHFSGRGLRDKNQTLWASWAIQSPELNIFFSGDS
CHHHEEEEEEEECCCCCCEEEEECCHHHCCCCCCCCCCCEEEEEEEECCCCEEEEECCCC
GYFDGFKKIGDKLGPFDLTLVETGAYDEMWADIHMQPEQSLRAHLDLQGQYLIPIHNSSF
CHHHHHHHHHHCCCCEEEEEEECCCCHHHHHEEECCCHHHHHHEECCCCCEEEEEECCCC
DLALHSWYEPLERIAAAAKAYAVPLLTPEFGQGINLNELAHSPALNQGWWKSYLPKDRPE
CCHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCC
FEVVPVKLASNK
EEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]