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The map label for this gene is cycH [H]

Identifier: 117918691

GI number: 117918691

Start: 261588

End: 262835

Strand: Reverse

Name: cycH [H]

Synonym: Shewana3_0233

Alternate gene names: 117918691

Gene position: 262835-261588 (Counterclockwise)

Preceding gene: 117918697

Following gene: 117918689

Centisome position: 5.29

GC content: 47.12

Gene sequence:

>1248_bases
ATGACGACATTTTGGATTTTTATTGCGCTTGTTGTGTTGGTCAGCTTAACGCTGATCTGGATCCCGCATTTCAGACAGCA
AAAGTTGTTACGCACTGAAGAAGCCGGCGTTCGCAGACAAACTAACCTTGAATTGTTCAATGAACGTCTTGCCACTCTTG
AGAAAGAACTCAATGAAGAACTGCTCGACCAAGCTGAATTTGATGCACTGAAGAAAGAGCTAGAAATCAGCCTGCTCCAA
GACATCAAACAAGCGAGCGATGATTCACTCGTCAACCAGATCAAACCTAAGAGCATTTTATGGCCATCGGTCATGTCGGT
CTGCTTGATTGCGATTTCAGGTTACCTCTATCAGCACTTGGGTGCCTTTGAGAATATCGGCAACACCCAACCTGCTAACC
CACATGCGGGTATGGACGCGGCGCAAATCATGGCACAACGCGTACAGATGATGGAGGCACAAGTACAAGCCGAGCCTGAA
AACAGCCAAGCTTGGTTCAGCCTAGGTCACGCTTATATCTCTGCTAACCAATTCGATAAAGCCGTTGCAGCCTTCGATAA
GGTGATGGAATTAGTCGGTAAACACGCTGAATTAATTGGTCCAAAAGCAACAGCTATGTACTATAAAGCGGGTCAGCAAA
TGACTCCGCAAATTCAAGCTTTAATTGATGAATCTTTAGCGTTAGATCCACAGGATCCATCAACCTTACTGCTCGTCGGT
ATGGATGCTTTCTTCACTGCTAACTATCAAAAAGCCATTGATTCATGGCAAACCATTCTCAATAGCGACCGCACCGATGT
AGACCGCGCCGCGCTGATGAATGCCATTGAAACGGCAAACCTGCGTATGCAAGGCGAAACCGCGGGCATGCCTAACGATG
ATGTCCACAAGCAGGCAAAAGTTGCGACTAAGTCTGTAAGTATTGCGATTTCAATTTCACCCGAACTGGCCGCACAAGCA
GGCCCTGATGACACTATCTTCGTCTTCGCCCGTGCGACCGAAGGTCCTAAAGTGCCATTAGCGGCAACTAAGGTGAGCGC
AAAAACTTTACCGGTAACAGTAACGCTCGATGACAGCACAGGTATGGGTGGCGATGTGAAACTGAGCCAAACTGCGAGTG
TTGAAGTGATCGCGGTGTTGTCTAAGCATGGCAATATCAAACCTCAGGCAGGTGATATTCAAGGCAAAGTCAGCAAAGTA
AATGTGGGTGACACTGCAAGCTTAGTGTTAGATACCCAAGTGCAATAA

Upstream 100 bases:

>100_bases
GTCTTATATTACTGTTCAATGAATAATCTTTACGTATAATCTTGCTTCCAAGCCGGCGGTAACAACCGCTTTTATGCAAA
CTAAAGTGAATATAGAAACA

Downstream 100 bases:

>100_bases
GTTATCCGTGCCTAGCGCTAGGTTTCGGCTTAGCGCAGACATAAAAAAACCGGCTAATGCCGGTTTTTTTAACACTGCAA
AAATTACTGAGCTTTAGACA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MTTFWIFIALVVLVSLTLIWIPHFRQQKLLRTEEAGVRRQTNLELFNERLATLEKELNEELLDQAEFDALKKELEISLLQ
DIKQASDDSLVNQIKPKSILWPSVMSVCLIAISGYLYQHLGAFENIGNTQPANPHAGMDAAQIMAQRVQMMEAQVQAEPE
NSQAWFSLGHAYISANQFDKAVAAFDKVMELVGKHAELIGPKATAMYYKAGQQMTPQIQALIDESLALDPQDPSTLLLVG
MDAFFTANYQKAIDSWQTILNSDRTDVDRAALMNAIETANLRMQGETAGMPNDDVHKQAKVATKSVSIAISISPELAAQA
GPDDTIFVFARATEGPKVPLAATKVSAKTLPVTVTLDDSTGMGGDVKLSQTASVEVIAVLSKHGNIKPQAGDIQGKVSKV
NVGDTASLVLDTQVQ

Sequences:

>Translated_415_residues
MTTFWIFIALVVLVSLTLIWIPHFRQQKLLRTEEAGVRRQTNLELFNERLATLEKELNEELLDQAEFDALKKELEISLLQ
DIKQASDDSLVNQIKPKSILWPSVMSVCLIAISGYLYQHLGAFENIGNTQPANPHAGMDAAQIMAQRVQMMEAQVQAEPE
NSQAWFSLGHAYISANQFDKAVAAFDKVMELVGKHAELIGPKATAMYYKAGQQMTPQIQALIDESLALDPQDPSTLLLVG
MDAFFTANYQKAIDSWQTILNSDRTDVDRAALMNAIETANLRMQGETAGMPNDDVHKQAKVATKSVSIAISISPELAAQA
GPDDTIFVFARATEGPKVPLAATKVSAKTLPVTVTLDDSTGMGGDVKLSQTASVEVIAVLSKHGNIKPQAGDIQGKVSKV
NVGDTASLVLDTQVQ
>Mature_414_residues
TTFWIFIALVVLVSLTLIWIPHFRQQKLLRTEEAGVRRQTNLELFNERLATLEKELNEELLDQAEFDALKKELEISLLQD
IKQASDDSLVNQIKPKSILWPSVMSVCLIAISGYLYQHLGAFENIGNTQPANPHAGMDAAQIMAQRVQMMEAQVQAEPEN
SQAWFSLGHAYISANQFDKAVAAFDKVMELVGKHAELIGPKATAMYYKAGQQMTPQIQALIDESLALDPQDPSTLLLVGM
DAFFTANYQKAIDSWQTILNSDRTDVDRAALMNAIETANLRMQGETAGMPNDDVHKQAKVATKSVSIAISISPELAAQAG
PDDTIFVFARATEGPKVPLAATKVSAKTLPVTVTLDDSTGMGGDVKLSQTASVEVIAVLSKHGNIKPQAGDIQGKVSKVN
VGDTASLVLDTQVQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1790513, Length=135, Percent_Identity=37.037037037037, Blast_Score=108, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45203; Mature: 45072

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFWIFIALVVLVSLTLIWIPHFRQQKLLRTEEAGVRRQTNLELFNERLATLEKELNEE
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LLDQAEFDALKKELEISLLQDIKQASDDSLVNQIKPKSILWPSVMSVCLIAISGYLYQHL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GAFENIGNTQPANPHAGMDAAQIMAQRVQMMEAQVQAEPENSQAWFSLGHAYISANQFDK
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHHHHH
AVAAFDKVMELVGKHAELIGPKATAMYYKAGQQMTPQIQALIDESLALDPQDPSTLLLVG
HHHHHHHHHHHHCCHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEE
MDAFFTANYQKAIDSWQTILNSDRTDVDRAALMNAIETANLRMQGETAGMPNDDVHKQAK
CHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHH
VATKSVSIAISISPELAAQAGPDDTIFVFARATEGPKVPLAATKVSAKTLPVTVTLDDST
HHEEEEEEEEEECHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEEEECCCC
GMGGDVKLSQTASVEVIAVLSKHGNIKPQAGDIQGKVSKVNVGDTASLVLDTQVQ
CCCCCEEECCCCCEEEEEEEHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCC
>Mature Secondary Structure 
TTFWIFIALVVLVSLTLIWIPHFRQQKLLRTEEAGVRRQTNLELFNERLATLEKELNEE
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LLDQAEFDALKKELEISLLQDIKQASDDSLVNQIKPKSILWPSVMSVCLIAISGYLYQHL
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GAFENIGNTQPANPHAGMDAAQIMAQRVQMMEAQVQAEPENSQAWFSLGHAYISANQFDK
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEHHHHHH
AVAAFDKVMELVGKHAELIGPKATAMYYKAGQQMTPQIQALIDESLALDPQDPSTLLLVG
HHHHHHHHHHHHCCHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEE
MDAFFTANYQKAIDSWQTILNSDRTDVDRAALMNAIETANLRMQGETAGMPNDDVHKQAK
CHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHH
VATKSVSIAISISPELAAQAGPDDTIFVFARATEGPKVPLAATKVSAKTLPVTVTLDDST
HHEEEEEEEEEECHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEEEECCCC
GMGGDVKLSQTASVEVIAVLSKHGNIKPQAGDIQGKVSKVNVGDTASLVLDTQVQ
CCCCCEEECCCCCEEEEEEEHHCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]