Click here to switch to the map view.

The map label for this gene is yoaF [H]

Identifier: 117918586

GI number: 117918586

Start: 144459

End: 144755

Strand: Reverse

Name: yoaF [H]

Synonym: Shewana3_0128

Alternate gene names: 117918586

Gene position: 144755-144459 (Counterclockwise)

Preceding gene: 117918587

Following gene: 117918583

Centisome position: 2.91

GC content: 52.53

Gene sequence:

>297_bases
ATGAAATTTACCTCACCACTGTTAATCGGCCTGATCATATGCGGCAGCTTAGTCGGCTGCGGCGAGAAGACTGAACCTGC
AACTCAGGCGCCCGCCGAAGTAACAACCGAAGCCAAAGCTGGCGCTAAGGTGCAAATCGCCAACCCAGCCGCCGAATATT
GCGTCTCACTGGGCGGCACTTCAGAAATCCAGAAGACAGCTGAAGGTGAACATGGCATTTGTACTTTACCAAGCGGTGAA
AAAATTGATGAGTGGGCGCTATTTCGTCGCGACCACCCACAGGAAAACGCCCAGTAA

Upstream 100 bases:

>100_bases
GACAGTGCCGCCGCTTTGTATATGGATATCATCAACCTATTTCTGCGTATCCTGCGGATTTTAGGACGTAAATAAGTCAC
TCAACGACAAGGAAAACAGC

Downstream 100 bases:

>100_bases
TTGAGGCTAGTAAAAAAAACAGGCGCACTCGGCGCCTGTTTTTATGCCCCGCTGATGACCTGATTACGCCACTGCAAACG
TTTAGCCTGCGAATGGAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MKFTSPLLIGLIICGSLVGCGEKTEPATQAPAEVTTEAKAGAKVQIANPAAEYCVSLGGTSEIQKTAEGEHGICTLPSGE
KIDEWALFRRDHPQENAQ

Sequences:

>Translated_98_residues
MKFTSPLLIGLIICGSLVGCGEKTEPATQAPAEVTTEAKAGAKVQIANPAAEYCVSLGGTSEIQKTAEGEHGICTLPSGE
KIDEWALFRRDHPQENAQ
>Mature_98_residues
MKFTSPLLIGLIICGSLVGCGEKTEPATQAPAEVTTEAKAGAKVQIANPAAEYCVSLGGTSEIQKTAEGEHGICTLPSGE
KIDEWALFRRDHPQENAQ

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788094, Length=93, Percent_Identity=41.9354838709677, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005590 [H]

Pfam domain/function: PF03891 DUF333 [H]

EC number: NA

Molecular weight: Translated: 10312; Mature: 10312

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTSPLLIGLIICGSLVGCGEKTEPATQAPAEVTTEAKAGAKVQIANPAAEYCVSLGGT
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEECCHHHHHHHHCCCC
SEIQKTAEGEHGICTLPSGEKIDEWALFRRDHPQENAQ
HHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKFTSPLLIGLIICGSLVGCGEKTEPATQAPAEVTTEAKAGAKVQIANPAAEYCVSLGGT
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCEEEECCHHHHHHHHCCCC
SEIQKTAEGEHGICTLPSGEKIDEWALFRRDHPQENAQ
HHHHHHCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]