Click here to switch to the map view.

The map label for this gene is 117918579

Identifier: 117918579

GI number: 117918579

Start: 135860

End: 136660

Strand: Reverse

Name: 117918579

Synonym: Shewana3_0121

Alternate gene names: NA

Gene position: 136660-135860 (Counterclockwise)

Preceding gene: 117918580

Following gene: 117918577

Centisome position: 2.75

GC content: 52.68

Gene sequence:

>801_bases
ATGTGCATACTCTTCGTCGCCCTTAAAACTCATCCCCAGTATCCGCTGATCATTTGCGCGAATAGGGATGAGTTTCACCA
CAGACCCACAGCCCCAGCACACTTTTGGCCACCGGAGCAGAATATGCTCGCGGGCAAGGACTTGCAGGCAGGTGGCACTT
GGTTTGGGGTGAATAAACAGGGGCAAATTGCGGGAGTCACTAACCTGAGGGTGGCGCAAAAGTCCCAAGAGCCAATGCGT
AGCCGCGGCGAGCTGATCATTAAAGCCCTAAGCTCGGGTTCGCTTATCTGTCCTAACTGGCTTGAGGAACACGCCGAAGA
TTATCAGCCATTTAATCTCGTGTTTGGCCAAGGCACCAACCTCTATTGCTTCAACAGTCTTAAGCGGAACACGGTAAAAC
TCACGGCAGGATTCCACGCCATTAGCAATGGCGCGCTCGATGATATCTGGCCGAAAATGGCTAAGGGCCAACGCTCGCTC
GAGGCCCTTATCCAACAATCGGAACCGCTTGAGCTAGAGTCGCTGATTAAGTTAATGCAGGATGATTCGCGTCCAGAGGA
TAACGAGCTACCCGACACTGGCGTCGGGCTAGAATGGGAACGCCGACTCGCGGCAATTTATATTCGTCACCCCGACTATG
GCACCCGCTCCACCAGCATTTTACTGCAAAATGCCCAAGGGGAAGTCCAGTTTACCGAAGTAAGATATGACGGTAAGGGT
CGGCGACTGGGACAGCAGGACTTTCACTTCACCCTGCCATCGCAATTACCTAAAGAGCCGGAATGTCTCGCCAATTTTTA
G

Upstream 100 bases:

>100_bases
CCACAGCCATAGCGATGCAAATAAGCACCATCACTAGCACTGTTCATTTGATCACAGACAGGCTAAGTTAATCCTACTCC
TAGGATAAATTTAGCCTGTT

Downstream 100 bases:

>100_bases
CGGTTCAGTCCGAACTGTGGTCCATAGTGATCACCCAGCGGTCATCAATTTTTTCCACCAGCAGGGTAAATACCCCCGTG
GGCGCATCCTTTTGCCGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MCILFVALKTHPQYPLIICANRDEFHHRPTAPAHFWPPEQNMLAGKDLQAGGTWFGVNKQGQIAGVTNLRVAQKSQEPMR
SRGELIIKALSSGSLICPNWLEEHAEDYQPFNLVFGQGTNLYCFNSLKRNTVKLTAGFHAISNGALDDIWPKMAKGQRSL
EALIQQSEPLELESLIKLMQDDSRPEDNELPDTGVGLEWERRLAAIYIRHPDYGTRSTSILLQNAQGEVQFTEVRYDGKG
RRLGQQDFHFTLPSQLPKEPECLANF

Sequences:

>Translated_266_residues
MCILFVALKTHPQYPLIICANRDEFHHRPTAPAHFWPPEQNMLAGKDLQAGGTWFGVNKQGQIAGVTNLRVAQKSQEPMR
SRGELIIKALSSGSLICPNWLEEHAEDYQPFNLVFGQGTNLYCFNSLKRNTVKLTAGFHAISNGALDDIWPKMAKGQRSL
EALIQQSEPLELESLIKLMQDDSRPEDNELPDTGVGLEWERRLAAIYIRHPDYGTRSTSILLQNAQGEVQFTEVRYDGKG
RRLGQQDFHFTLPSQLPKEPECLANF
>Mature_266_residues
MCILFVALKTHPQYPLIICANRDEFHHRPTAPAHFWPPEQNMLAGKDLQAGGTWFGVNKQGQIAGVTNLRVAQKSQEPMR
SRGELIIKALSSGSLICPNWLEEHAEDYQPFNLVFGQGTNLYCFNSLKRNTVKLTAGFHAISNGALDDIWPKMAKGQRSL
EALIQQSEPLELESLIKLMQDDSRPEDNELPDTGVGLEWERRLAAIYIRHPDYGTRSTSILLQNAQGEVQFTEVRYDGKG
RRLGQQDFHFTLPSQLPKEPECLANF

Specific function: Unknown

COG id: COG3332

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI190570176, Length=255, Percent_Identity=32.156862745098, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17566294, Length=262, Percent_Identity=27.8625954198473, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17563216, Length=261, Percent_Identity=26.4367816091954, Blast_Score=77, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6321566, Length=286, Percent_Identity=28.6713286713287, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30042; Mature: 30042

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCILFVALKTHPQYPLIICANRDEFHHRPTAPAHFWPPEQNMLAGKDLQAGGTWFGVNKQ
CEEEEEEECCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
GQIAGVTNLRVAQKSQEPMRSRGELIIKALSSGSLICPNWLEEHAEDYQPFNLVFGQGTN
CCEEEEEEEEEHHHHHHHHHHHHHEEEEECCCCCEECCHHHHHHHHCCCCEEEEEECCCC
LYCFNSLKRNTVKLTAGFHAISNGALDDIWPKMAKGQRSLEALIQQSEPLELESLIKLMQ
EEEECCCCCCEEEEEECCHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHH
DDSRPEDNELPDTGVGLEWERRLAAIYIRHPDYGTRSTSILLQNAQGEVQFTEVRYDGKG
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCCC
RRLGQQDFHFTLPSQLPKEPECLANF
CCCCCCCCEEECHHHCCCCCHHHCCC
>Mature Secondary Structure
MCILFVALKTHPQYPLIICANRDEFHHRPTAPAHFWPPEQNMLAGKDLQAGGTWFGVNKQ
CEEEEEEECCCCCCCEEEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
GQIAGVTNLRVAQKSQEPMRSRGELIIKALSSGSLICPNWLEEHAEDYQPFNLVFGQGTN
CCEEEEEEEEEHHHHHHHHHHHHHEEEEECCCCCEECCHHHHHHHHCCCCEEEEEECCCC
LYCFNSLKRNTVKLTAGFHAISNGALDDIWPKMAKGQRSLEALIQQSEPLELESLIKLMQ
EEEECCCCCCEEEEEECCHHHCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHH
DDSRPEDNELPDTGVGLEWERRLAAIYIRHPDYGTRSTSILLQNAQGEVQFTEVRYDGKG
CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEECCCC
RRLGQQDFHFTLPSQLPKEPECLANF
CCCCCCCCEEECHHHCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA