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The map label for this gene is def [H]

Identifier: 117918494

GI number: 117918494

Start: 42344

End: 42850

Strand: Reverse

Name: def [H]

Synonym: Shewana3_0035

Alternate gene names: 117918494

Gene position: 42850-42344 (Counterclockwise)

Preceding gene: 117918501

Following gene: 117918493

Centisome position: 0.86

GC content: 43.98

Gene sequence:

>507_bases
ATGGCACTATTAAAAGTTTTACGCTTTCCCGATGAAAGATTGCGAACTCAAGCGACGCCGGTCACAGAGTTTACTGCTGA
GTTGCAAACACAAATCGATGATATGTTCGAGACCATGTACCAAGAAAAAGGGATTGGTCTGGCAGCAACCCAAGTCGACT
ACCATAAACAACTGATCGTGATGGATTTACAAGACGAGGTCGATCGTCCTAAAGTCTTTATCAATCCCGAAATTATTGCC
AGTAGCGGTGATTTCTGTAACGAGGAAGGTTGTCTGTCAGTCCCAGGTATCTATGCCAAGGTCGACCGCGCCGAGTTTGT
TACCGTTAAGGCACTGGATAGACACGGTAATGAATTCACCGTTGAAGCCGATGAGCTTTTTGCTATTTGTATTCAGCATG
AAATGGATCATCTGAAAGGTAAATTATTTGTCGATTATCTGTCGCCATTGAAACGCCAACGGATCAAACAGAAACTTGAA
AAAGCGGCCAGACAGGACGCCAAATAA

Upstream 100 bases:

>100_bases
TTACTGTTATTGATAGGCACTAAAGATTAAAATTAGCCCATTAGCCTCAGTCAGTATAACCAACTGATTGAGATTTGACA
GACTTGTTAAGAGTTTAAGT

Downstream 100 bases:

>100_bases
GCATTAGGATCAGATTTGAAACCACTCAATATCATCTTCGCCGGAACACCGGATTTTGCCGCTCGCCATTTACAGGCGCT
GATTAACTCACATCACAATG

Product: peptide deformylase

Products: NA

Alternate protein names: PDF 1; Polypeptide deformylase 1 [H]

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVDRPKVFINPEIIA
SSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLE
KAARQDAK

Sequences:

>Translated_168_residues
MALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVDRPKVFINPEIIA
SSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLE
KAARQDAK
>Mature_167_residues
ALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVDRPKVFINPEIIAS
SGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEFTVEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEK
AARQDAK

Specific function: Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions

COG id: COG0242

COG function: function code J; N-formylmethionyl-tRNA deformylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polypeptide deformylase family [H]

Homologues:

Organism=Homo sapiens, GI11641243, Length=157, Percent_Identity=31.8471337579618, Blast_Score=75, Evalue=3e-14,
Organism=Escherichia coli, GI1789682, Length=168, Percent_Identity=60.7142857142857, Blast_Score=206, Evalue=7e-55,
Organism=Drosophila melanogaster, GI24645726, Length=157, Percent_Identity=29.2993630573248, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24645728, Length=156, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000181 [H]

Pfam domain/function: PF01327 Pep_deformylase [H]

EC number: =3.5.1.88 [H]

Molecular weight: Translated: 19248; Mature: 19117

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV
CHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHEEEE
MDLQDEVDRPKVFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEFT
EECCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCHHEECCCHHEEEEEEHHCCCCEEE
VEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARQDAK
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALLKVLRFPDERLRTQATPVTEFTAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV
HHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHEEEE
MDLQDEVDRPKVFINPEIIASSGDFCNEEGCLSVPGIYAKVDRAEFVTVKALDRHGNEFT
EECCCCCCCCEEEECCEEEECCCCCCCCCCCCCCCCHHEECCCHHEEEEEEHHCCCCEEE
VEADELFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAARQDAK
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]