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The map label for this gene is ydcN [C]

Identifier: 117676293

GI number: 117676293

Start: 241909

End: 242253

Strand: Direct

Name: ydcN [C]

Synonym: Shewana3_4356

Alternate gene names: 117676293

Gene position: 241909-242253 (Clockwise)

Preceding gene: 117676286

Following gene: 117676294

Centisome position: 86.72

GC content: 45.8

Gene sequence:

>345_bases
ATGGCTGACAAACTTCAGCAAGCCGCACTTATCAGCAAAAACATAAAGCACATGCGAGAATTACTTGGCTGGACACAGGC
AAGGCTCGCTAGCGAAGCTGGGATAACAGCGGCAGCACTGAGCATGATCGAAAAGGACGAAGGCCGAATGCCAACTATTG
TTGTGCTGAGGAAAATCGCTTCGGCATTGGGTGTTAAACCTTATGAAATAACAGGAGAAGATGCACCAGAAGATTCTGGA
GATAAAACGATTGAGTTCTACCGAAAATGGGGAGAACTTGATAAGCTGCCAGAACAGGATCAGCGTATATTGCGAGAAAT
GATGGAACGCTTCACCAAGAAGTAA

Upstream 100 bases:

>100_bases
ATTAACAGAAGTTAATTTATTAACCATCGTTTACAAACATACGCCTTCTAGCTAAATAGATCAACTGCTGTTAATATAAA
AATTAACGGAGGGTTATTTT

Downstream 100 bases:

>100_bases
GGAGTTGGTATGGAAGAACAAAAAGGAGCAATGGAGGCCGAATCTTTACTTGAAGATCTGGGTTTTGATCAGTTACCGAT
CAAAGTAATTCAATTTATTA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MADKLQQAALISKNIKHMRELLGWTQARLASEAGITAAALSMIEKDEGRMPTIVVLRKIASALGVKPYEITGEDAPEDSG
DKTIEFYRKWGELDKLPEQDQRILREMMERFTKK

Sequences:

>Translated_114_residues
MADKLQQAALISKNIKHMRELLGWTQARLASEAGITAAALSMIEKDEGRMPTIVVLRKIASALGVKPYEITGEDAPEDSG
DKTIEFYRKWGELDKLPEQDQRILREMMERFTKK
>Mature_113_residues
ADKLQQAALISKNIKHMRELLGWTQARLASEAGITAAALSMIEKDEGRMPTIVVLRKIASALGVKPYEITGEDAPEDSGD
KTIEFYRKWGELDKLPEQDQRILREMMERFTKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12948; Mature: 12817

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKLQQAALISKNIKHMRELLGWTQARLASEAGITAAALSMIEKDEGRMPTIVVLRKIA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHH
SALGVKPYEITGEDAPEDSGDKTIEFYRKWGELDKLPEQDQRILREMMERFTKK
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ADKLQQAALISKNIKHMRELLGWTQARLASEAGITAAALSMIEKDEGRMPTIVVLRKIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHH
SALGVKPYEITGEDAPEDSGDKTIEFYRKWGELDKLPEQDQRILREMMERFTKK
HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA