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The map label for this gene is tnpA1 [H]

Identifier: 117676176

GI number: 117676176

Start: 109046

End: 109474

Strand: Direct

Name: tnpA1 [H]

Synonym: Shewana3_4236

Alternate gene names: 117676176

Gene position: 109046-109474 (Clockwise)

Preceding gene: 117676173

Following gene: 117676179

Centisome position: 39.09

GC content: 40.33

Gene sequence:

>429_bases
GTGAGTGTACGCAACAAAGAATTACTTCAAGACTACCTTAAAAAAAGGCACAGCGTGAGCAAGTTGGTTGTTCATCTAGT
GTTTACAACGAAATACAGACGCAAGTTGTTTACGGGAGTTATGATCGAGCAATTAAGAGAGGCTTTTGAGTCAGCTTGTG
TAAAACTTGAATGTGAATTGATAGAAATGGATGGAGAACAGGATCACATTCATTTACTGATCTCATACCCTCCGAAACTT
TCAATTAGCGTAATGGTTAACAACTTGAAAGCAGTTTCATCTCGCATGTTGCGACGACAAAATACGCACCTTACGAGACA
GAGTAAAAGCTCCGCTCTATGGTCTCGTTCATACTTTGCTTGCACTGCTGGCGGTGCAACAATTGAAACATTAAAAGCCT
ATGTAGAGAGTCAATCGACTCCAGATTAA

Upstream 100 bases:

>100_bases
TGTTCTGGCGTTGGATAAATGCGTACTTTCGTTGCTCTTAACATTTCAGTGCTCATCTATATAATACCATTATAATATTG
GCTTAGATGGAACTTGTAAA

Downstream 100 bases:

>100_bases
GACGCTATCGCGTCTTACGCCTTATATCCCCGCCCTCATCGGGCGAGGGTTTACGGCGAAATTGCTAAAACGGAACCTAT
CGGTTCCGTCTGCGGCTTGT

Product: transposase IS200-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSVRNKELLQDYLKKRHSVSKLVVHLVFTTKYRRKLFTGVMIEQLREAFESACVKLECELIEMDGEQDHIHLLISYPPKL
SISVMVNNLKAVSSRMLRRQNTHLTRQSKSSALWSRSYFACTAGGATIETLKAYVESQSTPD

Sequences:

>Translated_142_residues
MSVRNKELLQDYLKKRHSVSKLVVHLVFTTKYRRKLFTGVMIEQLREAFESACVKLECELIEMDGEQDHIHLLISYPPKL
SISVMVNNLKAVSSRMLRRQNTHLTRQSKSSALWSRSYFACTAGGATIETLKAYVESQSTPD
>Mature_141_residues
SVRNKELLQDYLKKRHSVSKLVVHLVFTTKYRRKLFTGVMIEQLREAFESACVKLECELIEMDGEQDHIHLLISYPPKLS
ISVMVNNLKAVSSRMLRRQNTHLTRQSKSSALWSRSYFACTAGGATIETLKAYVESQSTPD

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 16293; Mature: 16162

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRNKELLQDYLKKRHSVSKLVVHLVFTTKYRRKLFTGVMIEQLREAFESACVKLECEL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
IEMDGEQDHIHLLISYPPKLSISVMVNNLKAVSSRMLRRQNTHLTRQSKSSALWSRSYFA
EECCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
CTAGGATIETLKAYVESQSTPD
EECCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVRNKELLQDYLKKRHSVSKLVVHLVFTTKYRRKLFTGVMIEQLREAFESACVKLECEL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
IEMDGEQDHIHLLISYPPKLSISVMVNNLKAVSSRMLRRQNTHLTRQSKSSALWSRSYFA
EECCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
CTAGGATIETLKAYVESQSTPD
EECCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]