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The map label for this gene is traC [H]

Identifier: 117676158

GI number: 117676158

Start: 89025

End: 91709

Strand: Reverse

Name: traC [H]

Synonym: Shewana3_4218

Alternate gene names: 117676158

Gene position: 91709-89025 (Counterclockwise)

Preceding gene: 117676159

Following gene: 117676156

Centisome position: 32.88

GC content: 45.66

Gene sequence:

>2685_bases
ATGACAACTGTAAATAACTGGAAAAATAGTCTAGGCATTGAGAAATATTCCTCAATCATCCCAATCTTAGATGAATTTGT
GAGTGAGGAAGGGGAACATCTTGGTTACATCCTAGAAGGGGGTTACCTTGGCGTAACGTGGCTATGCCCACCGTCAGGTG
GTTATGGTGCGAGTACGATTTCCACGCTGGATTCGATTTTCAAAAAAGTCTATCCAGAAGGGACTGTGCTGCAATTCTCG
CTAGTGGCTTCAGACGACTTAGTAACAGTGTTAGACAATTACCGACATTGCCGTGGCAAGCGTAATCGGTTCGATACGGT
CATTGATAATGACAATATGACCGAATACATGGTTGATTATTATAAAGCGCTTGCTGATACCTCAATCCCTTCGCGAGATA
TGGAAGGTGTACCGCTTCGCAACTTCGAGGTATGGGCGTCAATCAAGGTGCCTATCAAGAAAGCCATGCCGTCTACAGAG
GAAGTCGAAGATTTTGTCGATATGGCTAACAACCATGAAGCGTCATTACAACAAATCTTTGGTGTAGCGACCAAAATGCA
ACCGGAGATCCTAATTAACCGATTGCAGATGATCCACAACCCATCCCCGAATGCAGTTTGGCGCCGTGGAATTAAAGTAG
ATGGCAGACAAGGCTGTTACCGTTCTTCTCAGCCCATCCGTGCGCAGTTACTTGAACCTGGCACTGAGGTCAAAGTCGAT
GGTTCTGATTACATGGCGATTAAAGCGGAAGATGGTTCTAAACGATTTATTCAAAGTGTGAGCATTAAAGAGTTCCCAGA
TTCCATTTACCAAGGCACGTTACATTTAATGACTGGCGATTGGTTGAAAGGGGATGATGGCGCTATTCCCGGCAATTTCA
TGATCAACCTCGTGGTTGAAATGAGCCCTAAGAAAGTAGCTAAGGATTACTCCAAGCGCCGCCTAATGGCTAAACAGATA
GGTGAAGGCCCGTGGGCTCGTTGGATTTCGTCTTTGAAATACGGCCTGCAAGATTTTGAATACTACGAGCATTATCTAGA
GCGCGAAAAGGCTCAGCATTGCCGCTTTCATTTAAACTTTCAAATGTGGGGACCGACTTTAAAGTCAGTTAAGAACAGTA
CTAAAAAACTAATCACGCGCATGGAAGGCTTTAGTTGGTCAGCTGGCGTGGATAGCTTGATTGGCCGTTTCACTTGGCTA
AATGGTCTGCCAATGTGTACCTCAAGTGAAGTCAGTAGTTTCATTGAACGCTTTGACTTTCTCCCGAGTAACTTGGTCAA
GTTCTTCGTTCCTATGGTGGCATCGTGGCCAGGGAACGCAGTGCGACATCCTGTGCTGACATACATTGCCCGTGATGGTC
AGTTAATCACCTTTGACCCATTAAAGTCAGACTCCAATTACAACATCTTTATAACCGCAACCTCTGGCGCTGGGAAGTCG
GTCTCTGCTAACTATTTGATTGAAGGTCTACTTTCAACCGGAGAAAACCGTTATCCAGATGCACTTGGTAATATCCACGG
TGATCCTGATGGTGGCCGCGTGTTCATCATCGACTCAGGCCGCTCATACGTTAAAACAACAGAGTTGTACGCAGGACAGT
TCGTTGAGGTTATGCCGGACAACCGATTTGCGTTTAACCTATGTCCTTTTAAGAGTATCGACGAATCTCAAAAAGATACT
GATGAAGGCGTTGTAGATAGTGACGCTAACAACTATTTAGGCGCTCAAGGTGAAATGCTGTTGAACGTCCTGAAGTTGAT
GGCTTTCCCACTTGGAGACTGTAACAGCTATCAATACTCTGCAATGTCAGTATTGCTCATGCAACTGTGGAACGAGAAGG
GTAGGGAAACCAGTATTGACGATTTCGCTGATGCTTGTGCAAAACATCCCCGTGAAGAAGTGCGGCAAATCAGCGACCAA
TTGACTCCTTGGTGTTACTTACGCGGTGGCCAAAACAGTTGGATGTTCAACCCTAACAAGCCGCCCATTCAGTTTGAGAA
GGATTTAGTGGTGCTAGAGCTTGACGGACTTAACGGTTCAGACCAGCTCAAAGCAGTGTGTATCATGCTGTGTATTCAAC
GTATTCAACAGGAAATGTTTAGGCATGACCAACTGCATATTGTGAAAGCCTTTATTCTCGATGAAGCGTGGGAGTTCTTG
AAGGAAAACAAGGGTGTAGATGAGCAGACCCGTCAGGTTCTTCAAACTCTGGCAAAATTCCTCGAATCAGGTTGGCGTCG
TTTCCGTAAGTACAACAGCTTGGGTGTGTGTATTTCGCAATCGATGAAGGATGCCAACGAATCGCCTGCGGGTATCGCGA
TGGCCAGTAACTCGGCTCACTTATTCTACCTCATGCAAAACGGTGAGGAACTGGCCCGACTCAATAAAGAGGGTAAGTTC
ATTGAGCAGGATTACCTTTTACTGAGGAATATCAAGACGGTTAGGCCGTTTTTCAGTGAAGTTCTGTTATGCAGTGGCGG
AACAAAATCTGTAGGCAGGCTATATCTGCCAAGGGCTAAAGCACTGACTTACTCTACCGCTCCAGACGAGAAAAAACAGA
TTGAAATCATGATGAAAGACAAGGGGGTCGATATGTTTACCGCTTGCCAGATGATTGCTGAAAGGGAAGGAAAAGATCTA
GTCGGGACATGGCGACGTCGATTCGACGCCGAAAATGAATCTTAG

Upstream 100 bases:

>100_bases
TTTCAATGCTGATCTAGAAGCGGCAAAGGCCACTTTGGATCAAGCGCCAAAAGCTGTTCAAGAAGCGTTACGCGCTAACG
GCAATTAACACGGGTGCGAA

Downstream 100 bases:

>100_bases
GACTGATGCTCGCAGGCCTCCCGAAAGTACTTAAAAGAATAGATTAGCGTTGATACTGGAAACAACTTCTATAATCTGTC
TCTCAGGGAGGCTCGAATCT

Product: Type IV secretory pathway VirB4 components-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 894; Mature: 893

Protein sequence:

>894_residues
MTTVNNWKNSLGIEKYSSIIPILDEFVSEEGEHLGYILEGGYLGVTWLCPPSGGYGASTISTLDSIFKKVYPEGTVLQFS
LVASDDLVTVLDNYRHCRGKRNRFDTVIDNDNMTEYMVDYYKALADTSIPSRDMEGVPLRNFEVWASIKVPIKKAMPSTE
EVEDFVDMANNHEASLQQIFGVATKMQPEILINRLQMIHNPSPNAVWRRGIKVDGRQGCYRSSQPIRAQLLEPGTEVKVD
GSDYMAIKAEDGSKRFIQSVSIKEFPDSIYQGTLHLMTGDWLKGDDGAIPGNFMINLVVEMSPKKVAKDYSKRRLMAKQI
GEGPWARWISSLKYGLQDFEYYEHYLEREKAQHCRFHLNFQMWGPTLKSVKNSTKKLITRMEGFSWSAGVDSLIGRFTWL
NGLPMCTSSEVSSFIERFDFLPSNLVKFFVPMVASWPGNAVRHPVLTYIARDGQLITFDPLKSDSNYNIFITATSGAGKS
VSANYLIEGLLSTGENRYPDALGNIHGDPDGGRVFIIDSGRSYVKTTELYAGQFVEVMPDNRFAFNLCPFKSIDESQKDT
DEGVVDSDANNYLGAQGEMLLNVLKLMAFPLGDCNSYQYSAMSVLLMQLWNEKGRETSIDDFADACAKHPREEVRQISDQ
LTPWCYLRGGQNSWMFNPNKPPIQFEKDLVVLELDGLNGSDQLKAVCIMLCIQRIQQEMFRHDQLHIVKAFILDEAWEFL
KENKGVDEQTRQVLQTLAKFLESGWRRFRKYNSLGVCISQSMKDANESPAGIAMASNSAHLFYLMQNGEELARLNKEGKF
IEQDYLLLRNIKTVRPFFSEVLLCSGGTKSVGRLYLPRAKALTYSTAPDEKKQIEIMMKDKGVDMFTACQMIAEREGKDL
VGTWRRRFDAENES

Sequences:

>Translated_894_residues
MTTVNNWKNSLGIEKYSSIIPILDEFVSEEGEHLGYILEGGYLGVTWLCPPSGGYGASTISTLDSIFKKVYPEGTVLQFS
LVASDDLVTVLDNYRHCRGKRNRFDTVIDNDNMTEYMVDYYKALADTSIPSRDMEGVPLRNFEVWASIKVPIKKAMPSTE
EVEDFVDMANNHEASLQQIFGVATKMQPEILINRLQMIHNPSPNAVWRRGIKVDGRQGCYRSSQPIRAQLLEPGTEVKVD
GSDYMAIKAEDGSKRFIQSVSIKEFPDSIYQGTLHLMTGDWLKGDDGAIPGNFMINLVVEMSPKKVAKDYSKRRLMAKQI
GEGPWARWISSLKYGLQDFEYYEHYLEREKAQHCRFHLNFQMWGPTLKSVKNSTKKLITRMEGFSWSAGVDSLIGRFTWL
NGLPMCTSSEVSSFIERFDFLPSNLVKFFVPMVASWPGNAVRHPVLTYIARDGQLITFDPLKSDSNYNIFITATSGAGKS
VSANYLIEGLLSTGENRYPDALGNIHGDPDGGRVFIIDSGRSYVKTTELYAGQFVEVMPDNRFAFNLCPFKSIDESQKDT
DEGVVDSDANNYLGAQGEMLLNVLKLMAFPLGDCNSYQYSAMSVLLMQLWNEKGRETSIDDFADACAKHPREEVRQISDQ
LTPWCYLRGGQNSWMFNPNKPPIQFEKDLVVLELDGLNGSDQLKAVCIMLCIQRIQQEMFRHDQLHIVKAFILDEAWEFL
KENKGVDEQTRQVLQTLAKFLESGWRRFRKYNSLGVCISQSMKDANESPAGIAMASNSAHLFYLMQNGEELARLNKEGKF
IEQDYLLLRNIKTVRPFFSEVLLCSGGTKSVGRLYLPRAKALTYSTAPDEKKQIEIMMKDKGVDMFTACQMIAEREGKDL
VGTWRRRFDAENES
>Mature_893_residues
TTVNNWKNSLGIEKYSSIIPILDEFVSEEGEHLGYILEGGYLGVTWLCPPSGGYGASTISTLDSIFKKVYPEGTVLQFSL
VASDDLVTVLDNYRHCRGKRNRFDTVIDNDNMTEYMVDYYKALADTSIPSRDMEGVPLRNFEVWASIKVPIKKAMPSTEE
VEDFVDMANNHEASLQQIFGVATKMQPEILINRLQMIHNPSPNAVWRRGIKVDGRQGCYRSSQPIRAQLLEPGTEVKVDG
SDYMAIKAEDGSKRFIQSVSIKEFPDSIYQGTLHLMTGDWLKGDDGAIPGNFMINLVVEMSPKKVAKDYSKRRLMAKQIG
EGPWARWISSLKYGLQDFEYYEHYLEREKAQHCRFHLNFQMWGPTLKSVKNSTKKLITRMEGFSWSAGVDSLIGRFTWLN
GLPMCTSSEVSSFIERFDFLPSNLVKFFVPMVASWPGNAVRHPVLTYIARDGQLITFDPLKSDSNYNIFITATSGAGKSV
SANYLIEGLLSTGENRYPDALGNIHGDPDGGRVFIIDSGRSYVKTTELYAGQFVEVMPDNRFAFNLCPFKSIDESQKDTD
EGVVDSDANNYLGAQGEMLLNVLKLMAFPLGDCNSYQYSAMSVLLMQLWNEKGRETSIDDFADACAKHPREEVRQISDQL
TPWCYLRGGQNSWMFNPNKPPIQFEKDLVVLELDGLNGSDQLKAVCIMLCIQRIQQEMFRHDQLHIVKAFILDEAWEFLK
ENKGVDEQTRQVLQTLAKFLESGWRRFRKYNSLGVCISQSMKDANESPAGIAMASNSAHLFYLMQNGEELARLNKEGKFI
EQDYLLLRNIKTVRPFFSEVLLCSGGTKSVGRLYLPRAKALTYSTAPDEKKQIEIMMKDKGVDMFTACQMIAEREGKDLV
GTWRRRFDAENES

Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002789
- InterPro:   IPR014117 [H]

Pfam domain/function: PF01935 DUF87 [H]

EC number: NA

Molecular weight: Translated: 101286; Mature: 101154

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTVNNWKNSLGIEKYSSIIPILDEFVSEEGEHLGYILEGGYLGVTWLCPPSGGYGASTI
CCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEEECCCCCCCHHHH
STLDSIFKKVYPEGTVLQFSLVASDDLVTVLDNYRHCRGKRNRFDTVIDNDNMTEYMVDY
HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHH
YKALADTSIPSRDMEGVPLRNFEVWASIKVPIKKAMPSTEEVEDFVDMANNHEASLQQIF
HHHHHCCCCCCCCCCCCCCCCEEEEEEEECCHHHCCCCHHHHHHHHHHCCCCHHHHHHHH
GVATKMQPEILINRLQMIHNPSPNAVWRRGIKVDGRQGCYRSSQPIRAQLLEPGTEVKVD
HHHHCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEC
GSDYMAIKAEDGSKRFIQSVSIKEFPDSIYQGTLHLMTGDWLKGDDGAIPGNFMINLVVE
CCCEEEEEECCCHHHHHHHCCHHHCCHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEEE
MSPKKVAKDYSKRRLMAKQIGEGPWARWISSLKYGLQDFEYYEHYLEREKAQHCRFHLNF
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
QMWGPTLKSVKNSTKKLITRMEGFSWSAGVDSLIGRFTWLNGLPMCTSSEVSSFIERFDF
EECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
LPSNLVKFFVPMVASWPGNAVRHPVLTYIARDGQLITFDPLKSDSNYNIFITATSGAGKS
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCCCC
VSANYLIEGLLSTGENRYPDALGNIHGDPDGGRVFIIDSGRSYVKTTELYAGQFVEVMPD
CCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCEEHHHHHHCCEEEECCC
NRFAFNLCPFKSIDESQKDTDEGVVDSDANNYLGAQGEMLLNVLKLMAFPLGDCNSYQYS
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHH
AMSVLLMQLWNEKGRETSIDDFADACAKHPREEVRQISDQLTPWCYLRGGQNSWMFNPNK
HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
PPIQFEKDLVVLELDGLNGSDQLKAVCIMLCIQRIQQEMFRHDQLHIVKAFILDEAWEFL
CCCEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
KENKGVDEQTRQVLQTLAKFLESGWRRFRKYNSLGVCISQSMKDANESPAGIAMASNSAH
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEECCCCE
LFYLMQNGEELARLNKEGKFIEQDYLLLRNIKTVRPFFSEVLLCSGGTKSVGRLYLPRAK
EEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
ALTYSTAPDEKKQIEIMMKDKGVDMFTACQMIAEREGKDLVGTWRRRFDAENES
EEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTVNNWKNSLGIEKYSSIIPILDEFVSEEGEHLGYILEGGYLGVTWLCPPSGGYGASTI
CCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEEEECCCCCCCHHHH
STLDSIFKKVYPEGTVLQFSLVASDDLVTVLDNYRHCRGKRNRFDTVIDNDNMTEYMVDY
HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHH
YKALADTSIPSRDMEGVPLRNFEVWASIKVPIKKAMPSTEEVEDFVDMANNHEASLQQIF
HHHHHCCCCCCCCCCCCCCCCEEEEEEEECCHHHCCCCHHHHHHHHHHCCCCHHHHHHHH
GVATKMQPEILINRLQMIHNPSPNAVWRRGIKVDGRQGCYRSSQPIRAQLLEPGTEVKVD
HHHHCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEC
GSDYMAIKAEDGSKRFIQSVSIKEFPDSIYQGTLHLMTGDWLKGDDGAIPGNFMINLVVE
CCCEEEEEECCCHHHHHHHCCHHHCCHHHHCCEEEEEECCCCCCCCCCCCCCEEEEEEEE
MSPKKVAKDYSKRRLMAKQIGEGPWARWISSLKYGLQDFEYYEHYLEREKAQHCRFHLNF
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
QMWGPTLKSVKNSTKKLITRMEGFSWSAGVDSLIGRFTWLNGLPMCTSSEVSSFIERFDF
EECCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
LPSNLVKFFVPMVASWPGNAVRHPVLTYIARDGQLITFDPLKSDSNYNIFITATSGAGKS
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEEECCCCCC
VSANYLIEGLLSTGENRYPDALGNIHGDPDGGRVFIIDSGRSYVKTTELYAGQFVEVMPD
CCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCEEEEEECCCCCEEHHHHHHCCEEEECCC
NRFAFNLCPFKSIDESQKDTDEGVVDSDANNYLGAQGEMLLNVLKLMAFPLGDCNSYQYS
CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHH
AMSVLLMQLWNEKGRETSIDDFADACAKHPREEVRQISDQLTPWCYLRGGQNSWMFNPNK
HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
PPIQFEKDLVVLELDGLNGSDQLKAVCIMLCIQRIQQEMFRHDQLHIVKAFILDEAWEFL
CCCEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
KENKGVDEQTRQVLQTLAKFLESGWRRFRKYNSLGVCISQSMKDANESPAGIAMASNSAH
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEECCCCE
LFYLMQNGEELARLNKEGKFIEQDYLLLRNIKTVRPFFSEVLLCSGGTKSVGRLYLPRAK
EEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCC
ALTYSTAPDEKKQIEIMMKDKGVDMFTACQMIAEREGKDLVGTWRRRFDAENES
EEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2265751; 7915817; 1355084 [H]