| Definition | Borrelia afzelii PKo plasmid lp60, complete sequence. |
|---|---|
| Accession | NC_008564 |
| Length | 59,958 |
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The map label for this gene is 117621625
Identifier: 117621625
GI number: 117621625
Start: 40319
End: 40882
Strand: Direct
Name: 117621625
Synonym: BAPKO_2054
Alternate gene names: NA
Gene position: 40319-40882 (Clockwise)
Preceding gene: 117621624
Following gene: 117621630
Centisome position: 67.25
GC content: 29.08
Gene sequence:
>564_bases ATGGAAAATAATGTTTATGGGTTGGGTAGTTTAAAAGGTTCTTCTGTTGGCGCGTTAAAGCAGTATTTTTTTGAGAATGT GTTTATTTGCAGAGTAGGTATTATTAAAAGTTTTGATTTTAAAACCCAAACAGGGATTGTTACTATTAAAGAGTATGAGG GGTTAGAGATTAGTACTAGAAATATATCTAATTTTAATCTTGATTTAGCAGAAGAAGATGAAGTGGTTTTGCTTCAAAGT AATTTTAATATTTTCCAAGAAAGCGATAATAATCATTTTGACAAAAATTATTATTATATTTTAAGTGTTCTTAATCCCAA GAAAATTGGTATTAAGCTTAATGAGCTTAAAGTGAGCCTAGAAGAGTTTGATACACAAAGCGAAAATATAAAATTTAAAG GGAAAAAATTGATTATTGATGTAGATAGTATTGAAATTAAAGGTAATTTAAAGATTAATGGAACTAATTTCGAGAATCAT ATGCACAGTTCTGGTACTTTAACGTATGTTAATAGCAGTGGTGCGCCAACAGTTACAACTGGAAAAACAGGTCCTCTTGT TTGA
Upstream 100 bases:
>100_bases ATTTATTGTAAGGTTAAAAATACTAGTGCTAGACTAAGTAGCACTAGGGAGTGTGTTTTAAATCTTGAGCTTTACTGTGA AGATAAAAAAGGAATGTATT
Downstream 100 bases:
>100_bases ATAAGTACGCAAAATCACTAATTCACAACTTAAGATTTAAGTATAAGCTTGTTAACAAGGTTTTTAGTGGGCATTTTCTA CTAATGAGATTAAATTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 187; Mature: 187
Protein sequence:
>187_residues MENNVYGLGSLKGSSVGALKQYFFENVFICRVGIIKSFDFKTQTGIVTIKEYEGLEISTRNISNFNLDLAEEDEVVLLQS NFNIFQESDNNHFDKNYYYILSVLNPKKIGIKLNELKVSLEEFDTQSENIKFKGKKLIIDVDSIEIKGNLKINGTNFENH MHSSGTLTYVNSSGAPTVTTGKTGPLV
Sequences:
>Translated_187_residues MENNVYGLGSLKGSSVGALKQYFFENVFICRVGIIKSFDFKTQTGIVTIKEYEGLEISTRNISNFNLDLAEEDEVVLLQS NFNIFQESDNNHFDKNYYYILSVLNPKKIGIKLNELKVSLEEFDTQSENIKFKGKKLIIDVDSIEIKGNLKINGTNFENH MHSSGTLTYVNSSGAPTVTTGKTGPLV >Mature_187_residues MENNVYGLGSLKGSSVGALKQYFFENVFICRVGIIKSFDFKTQTGIVTIKEYEGLEISTRNISNFNLDLAEEDEVVLLQS NFNIFQESDNNHFDKNYYYILSVLNPKKIGIKLNELKVSLEEFDTQSENIKFKGKKLIIDVDSIEIKGNLKINGTNFENH MHSSGTLTYVNSSGAPTVTTGKTGPLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20964; Mature: 20964
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENNVYGLGSLKGSSVGALKQYFFENVFICRVGIIKSFDFKTQTGIVTIKEYEGLEISTR CCCCEEEEECCCCCCHHHHHHHHHCCEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEC NISNFNLDLAEEDEVVLLQSNFNIFQESDNNHFDKNYYYILSVLNPKKIGIKLNELKVSL CCCEEEEEECCCCCEEEEECCCEEEECCCCCCCCCCEEEEEEECCCHHHCEEEHHEEEEH EEFDTQSENIKFKGKKLIIDVDSIEIKGNLKINGTNFENHMHSSGTLTYVNSSGAPTVTT HHCCCCCCCEEECCCEEEEEECCEEEEEEEEECCCCHHHCCCCCCEEEEEECCCCCEEEC GKTGPLV CCCCCCC >Mature Secondary Structure MENNVYGLGSLKGSSVGALKQYFFENVFICRVGIIKSFDFKTQTGIVTIKEYEGLEISTR CCCCEEEEECCCCCCHHHHHHHHHCCEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEC NISNFNLDLAEEDEVVLLQSNFNIFQESDNNHFDKNYYYILSVLNPKKIGIKLNELKVSL CCCEEEEEECCCCCEEEEECCCEEEECCCCCCCCCCEEEEEEECCCHHHCEEEHHEEEEH EEFDTQSENIKFKGKKLIIDVDSIEIKGNLKINGTNFENHMHSSGTLTYVNSSGAPTVTT HHCCCCCCCEEECCCEEEEEECCEEEEEEEEECCCCHHHCCCCCCEEEEEECCCCCEEEC GKTGPLV CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA