| Definition | Borrelia afzelii PKo plasmid lp60, complete sequence. |
|---|---|
| Accession | NC_008564 |
| Length | 59,958 |
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The map label for this gene is 117621609
Identifier: 117621609
GI number: 117621609
Start: 30158
End: 30769
Strand: Direct
Name: 117621609
Synonym: BAPKO_2038
Alternate gene names: NA
Gene position: 30158-30769 (Clockwise)
Preceding gene: 117621608
Following gene: 117621610
Centisome position: 50.3
GC content: 32.19
Gene sequence:
>612_bases ATGAGTGATTCAGTTGATTTTAAAAAAGAGATAGAAAAACTAAAAGCATCAAAAGTAGAACTTGAGAGTCAGCTTGAAAG TTTAAAAAAAAATCAAGCTCAAAAAATTGTTTTAGACAAATTACAAAGTGTTAATGCTAACAGTTGCCCTGTGTTTGAGA GCAATTCTAAGTTTCAAGATGAGGGATTTTATTTTGCTCAAAAAGGCGGACTTAAGAGATCTTCTGCTGATAAGTTTGAA AATTACCAAGCTCAAGATTTTTGCTACAAATGTGGGGTTAAGCTTATTGTTAATGGTTCACATTTGCAAATAGCAAGAGG CGGCGGCAGTGATCTTTATGGGGTTTGTGTTGACTTTGATGATTTTTCAAGAACCGGGACAGTTGTTCCAATAACTTGTA GTTTTGAATGTGTTTTGATTGCTAAAGATAAAACAATTAAAGCAGGAGATAAATTAATAATAAACAGCGAAGGGTTTTTA GAAAAAGCTTTTGAGAATGCATCAATTATTCACGCTTTAGCATTAGGATCTGCTGAAGAATTTAAAGACAAAAGAGATGT TTATGGTGTTAGAGTTCTTTTTTTGGTCAAGCAAATAAAAGATGCAATTTAA
Upstream 100 bases:
>100_bases AGAGCTTAAGCGTGAATTTTATTGTAATAAAAAAGTATTAGCTTAAATTTTTGCAATTTAAGCTTTTAATAAAAAATTAA TTTAAAAAAGGAGATTATTA
Downstream 100 bases:
>100_bases AATAGGAGAATTTAAAATGGATGAGAGTATATTAAATAACGATGAGTATGTAAACGTAGTAAGGGATGTTTTAGTGCAGG AGTGTCCAATTCCGGAATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MSDSVDFKKEIEKLKASKVELESQLESLKKNQAQKIVLDKLQSVNANSCPVFESNSKFQDEGFYFAQKGGLKRSSADKFE NYQAQDFCYKCGVKLIVNGSHLQIARGGGSDLYGVCVDFDDFSRTGTVVPITCSFECVLIAKDKTIKAGDKLIINSEGFL EKAFENASIIHALALGSAEEFKDKRDVYGVRVLFLVKQIKDAI
Sequences:
>Translated_203_residues MSDSVDFKKEIEKLKASKVELESQLESLKKNQAQKIVLDKLQSVNANSCPVFESNSKFQDEGFYFAQKGGLKRSSADKFE NYQAQDFCYKCGVKLIVNGSHLQIARGGGSDLYGVCVDFDDFSRTGTVVPITCSFECVLIAKDKTIKAGDKLIINSEGFL EKAFENASIIHALALGSAEEFKDKRDVYGVRVLFLVKQIKDAI >Mature_202_residues SDSVDFKKEIEKLKASKVELESQLESLKKNQAQKIVLDKLQSVNANSCPVFESNSKFQDEGFYFAQKGGLKRSSADKFEN YQAQDFCYKCGVKLIVNGSHLQIARGGGSDLYGVCVDFDDFSRTGTVVPITCSFECVLIAKDKTIKAGDKLIINSEGFLE KAFENASIIHALALGSAEEFKDKRDVYGVRVLFLVKQIKDAI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22516; Mature: 22385
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSVDFKKEIEKLKASKVELESQLESLKKNQAQKIVLDKLQSVNANSCPVFESNSKFQD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCC EGFYFAQKGGLKRSSADKFENYQAQDFCYKCGVKLIVNGSHLQIARGGGSDLYGVCVDFD CCEEEEECCCCCCCCHHHHHCCCHHHHHHHCCEEEEEECCEEEEEECCCCCEEEEEEECC DFSRTGTVVPITCSFECVLIAKDKTIKAGDKLIINSEGFLEKAFENASIIHALALGSAEE CCCCCCCEEEEEECEEEEEEECCCEECCCCEEEECCCHHHHHHHCCCHHHHHHHCCCHHH FKDKRDVYGVRVLFLVKQIKDAI HHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SDSVDFKKEIEKLKASKVELESQLESLKKNQAQKIVLDKLQSVNANSCPVFESNSKFQD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCC EGFYFAQKGGLKRSSADKFENYQAQDFCYKCGVKLIVNGSHLQIARGGGSDLYGVCVDFD CCEEEEECCCCCCCCHHHHHCCCHHHHHHHCCEEEEEECCEEEEEECCCCCEEEEEEECC DFSRTGTVVPITCSFECVLIAKDKTIKAGDKLIINSEGFLEKAFENASIIHALALGSAEE CCCCCCCEEEEEECEEEEEEECCCEECCCCEEEECCCHHHHHHHCCCHHHHHHHCCCHHH FKDKRDVYGVRVLFLVKQIKDAI HHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA