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The map label for this gene is rpiR [C]

Identifier: 116874064

GI number: 116874064

Start: 2681559

End: 2682410

Strand: Direct

Name: rpiR [C]

Synonym: lwe2648

Alternate gene names: 116874064

Gene position: 2681559-2682410 (Clockwise)

Preceding gene: 116874063

Following gene: 116874065

Centisome position: 95.29

GC content: 35.21

Gene sequence:

>852_bases
ATGAATATATTAATTAAAATAAGAGAATTAGCCAATTTAACGAATAGCGAAAAAGAACTTGCCAACTACATTTTGGCAAA
TCCGAAAAAAACACTTCAATTCAAGCCTAAAGAACTAGCCACATCTGCATTCGTTTCCACCGCAACCATCTATCGCTTAA
TCAACAAGTTAGGACTAAACGGTATTGGTGAACTAAAAATCGAAATCGCTTCAAGTCTTCGTGAAACAACCACAGAAAAA
GAAATAAATTACGATTATCCTATTTTAGAATCAGATACACCTTACCAGATTATGACCAACCTACAGCAAATATACAAAGG
AACCATTGATGAAACGTTAAATAACGCTGATCCAGAAGAACTCGTAAGGATTGGTGAAAAATTGGTCAATGCGAAAATCA
TTGATGTATACGCAGCTTCTGCTAACTTATTCTTTGCTCAAAATTTTAAATTTCAAATGCAGGAAATTGGTGTTCTAGTC
AACGTTCCTGAGGAAGATTACATCCAAAGCTTGTCTGCAGCAAATAGCGATAAAAACCATATTGCCATTGTGGTTTCTTA
CGGCGGACGAAGCCGGACACTTCAAAGAGTCGTCCATATTCTGTCTGAAAACAATGTCGACATTATCTTAATTACTTCCA
TGCAACAAAATTCCTTAGCCAAATTTGCTACACACAAAATTTATATGGCATCCGCTGAGAATCATTACAACAAAGTCTCC
TCGTTCTCAACTAGGCAGTCATTACTAAGCATTTTCGACACGCTTTATTCGGTTTATTTTAATCACGATTACGAAAAAAA
TATCCAGTATAAAACAACTAATTATCAAAAAATGAACGCCGAATTGGAATGA

Upstream 100 bases:

>100_bases
CTAAATTTCCATCGGGACGCCAACCTTTTTTAACGTAAATTTTCCGTGGTATAATTACTTATGATCCATTTGCCATTCTA
AAAAGTTAGGATTTGAAACG

Downstream 100 bases:

>100_bases
TTTTTCAAAAAGACTGCTATTTTCCTTTCGAACTGAAAAAAAGCTCTCAATATTTATCACTTCTAACTTTTCCTTATTTT
CTAATGATACAATGAAGAAA

Product: RpiR family phosphosugar-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MNILIKIRELANLTNSEKELANYILANPKKTLQFKPKELATSAFVSTATIYRLINKLGLNGIGELKIEIASSLRETTTEK
EINYDYPILESDTPYQIMTNLQQIYKGTIDETLNNADPEELVRIGEKLVNAKIIDVYAASANLFFAQNFKFQMQEIGVLV
NVPEEDYIQSLSAANSDKNHIAIVVSYGGRSRTLQRVVHILSENNVDIILITSMQQNSLAKFATHKIYMASAENHYNKVS
SFSTRQSLLSIFDTLYSVYFNHDYEKNIQYKTTNYQKMNAELE

Sequences:

>Translated_283_residues
MNILIKIRELANLTNSEKELANYILANPKKTLQFKPKELATSAFVSTATIYRLINKLGLNGIGELKIEIASSLRETTTEK
EINYDYPILESDTPYQIMTNLQQIYKGTIDETLNNADPEELVRIGEKLVNAKIIDVYAASANLFFAQNFKFQMQEIGVLV
NVPEEDYIQSLSAANSDKNHIAIVVSYGGRSRTLQRVVHILSENNVDIILITSMQQNSLAKFATHKIYMASAENHYNKVS
SFSTRQSLLSIFDTLYSVYFNHDYEKNIQYKTTNYQKMNAELE
>Mature_283_residues
MNILIKIRELANLTNSEKELANYILANPKKTLQFKPKELATSAFVSTATIYRLINKLGLNGIGELKIEIASSLRETTTEK
EINYDYPILESDTPYQIMTNLQQIYKGTIDETLNNADPEELVRIGEKLVNAKIIDVYAASANLFFAQNFKFQMQEIGVLV
NVPEEDYIQSLSAANSDKNHIAIVVSYGGRSRTLQRVVHILSENNVDIILITSMQQNSLAKFATHKIYMASAENHYNKVS
SFSTRQSLLSIFDTLYSVYFNHDYEKNIQYKTTNYQKMNAELE

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=273, Percent_Identity=24.9084249084249, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788767, Length=249, Percent_Identity=22.0883534136546, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788159, Length=260, Percent_Identity=23.8461538461538, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 32232; Mature: 32232

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIKIRELANLTNSEKELANYILANPKKTLQFKPKELATSAFVSTATIYRLINKLGLN
CCEEEEEHHHHCCCCCHHHHHHHHHCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHCCC
GIGELKIEIASSLRETTTEKEINYDYPILESDTPYQIMTNLQQIYKGTIDETLNNADPEE
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCHHH
LVRIGEKLVNAKIIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDKNH
HHHHHHHHHCCEEEEEEECCCCEEEEECCEEEHHHCCEEEECCCHHHHHHHHHCCCCCCE
IAIVVSYGGRSRTLQRVVHILSENNVDIILITSMQQNSLAKFATHKIYMASAENHYNKVS
EEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHEEEEECCHHHHHHHH
SFSTRQSLLSIFDTLYSVYFNHDYEKNIQYKTTNYQKMNAELE
HHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEECCCEECCCCCC
>Mature Secondary Structure
MNILIKIRELANLTNSEKELANYILANPKKTLQFKPKELATSAFVSTATIYRLINKLGLN
CCEEEEEHHHHCCCCCHHHHHHHHHCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHCCC
GIGELKIEIASSLRETTTEKEINYDYPILESDTPYQIMTNLQQIYKGTIDETLNNADPEE
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHCCCCHHH
LVRIGEKLVNAKIIDVYAASANLFFAQNFKFQMQEIGVLVNVPEEDYIQSLSAANSDKNH
HHHHHHHHHCCEEEEEEECCCCEEEEECCEEEHHHCCEEEECCCHHHHHHHHHCCCCCCE
IAIVVSYGGRSRTLQRVVHILSENNVDIILITSMQQNSLAKFATHKIYMASAENHYNKVS
EEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHEEEEECCHHHHHHHH
SFSTRQSLLSIFDTLYSVYFNHDYEKNIQYKTTNYQKMNAELE
HHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEECCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]