| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is uvrX [H]
Identifier: 116874041
GI number: 116874041
Start: 2652480
End: 2653736
Strand: Direct
Name: uvrX [H]
Synonym: lwe2625
Alternate gene names: 116874041
Gene position: 2652480-2653736 (Clockwise)
Preceding gene: 116874040
Following gene: 116874048
Centisome position: 94.26
GC content: 39.22
Gene sequence:
>1257_bases GTGCGCCGCGTCGTGATATTTTATGTATTGATATTAAATCGTTTTTTCGCCTCCGTTGAGTGTGTTAAACGCAGGTTGAA TCCCCTTGATGCGTATTTAGTCGTAATGAGCAACGCAGAACGTGCTGGTGGCCTTGTTTTAGCTGCAACGCCAAAAATGA AACAAGATCATCATATCAAAACCGGATCGAGAATGTATGAATTGCCAACTTGGGATAAACGAATTATTATTGCACCTCCA CGAATGAAACTATATTTAAAAGTAAACGCGATGATTCAAGCTATATTCAAACGTTATGTTCCCGCTGAGTTTATTCATGT TTATAGTATTGATGAATGTTTTCTAGATATTACTGGATCGCATTTGTTGTTTGGAAGTACAGAAGAAATCGTTCGCAAAA TCCAGCGCGATATTTTAGAAGAGTTGCGGCTTTATGTCACAGTGGGAATTGGTGATAACCCGCTTCTAGCCAAGCTTGCA CTTGATAATGTGGCTAAGAACCGTGATGACGGAATAGCTGAGTGGCGCTATGCAGATGTTCCAGAGACAATTTGGAAGAT TAGGCATTTGGATGATGTATGCGGAATTGGTCGCCGGACTGTTGTTCGCCTTCAAAAGATGGGGATTTTTAATATGTATC AACTAAGCCAAACTCCGCCCCCTGTTTTAAAAAAAGCAATGGGAGTTATTGGCGAACAGCTTTATTATCATGCGCACGGA ATTGATTACAGCCTTTTAAATGAAAAATATGTTCCTGTTAGTAAAAGTTATGGAAAAAGCCAAATCCTTGAAAGAGATTA CCATGCGTCCGCCGAAGTAGAAATAGTTATTCGCGAAATGGTAGAAGAAGTAGCTATGCGTTTGCGGCAAAACCATGTAG ATACTGCCGTCATTCATTTAAGTATCGGCTACAGCAAATACAGCATAAAAAAAGGATTTAGCCATCAAGCTAAAATCCCA TCTACTAGTAGTAGTCATGCGCTTATTCCTTATTTTCTGCAATTATTCCGCCGCTACGATGAACGAGAACCTGTACGCTC CATTGCCATTTCATGTGGTAAAATCACTTTAAAAACCGGTTTGCAACTCAATTTATTTGAAGATACATCCCATACATTAA ACCAAGAACAACTTGAAATAACAGTTGATAAAATCCGCACTCGTTATGGTTTTAAATCACTTATGCACGCGAGTAGTTTA CTAAATGGAGCAACAGGATTAAAACGCTCTGAAATGGTTGGTGGCCATAAAGGTTAA
Upstream 100 bases:
>100_bases TATCAAAAACTCAGAAGGTATTATTCCACTTTCTTTTTCCGCTATTAGAAATGTAGAAGAAAGGAGTGTCGACAAATGGT ACAAGTAGAAGATTACAGTC
Downstream 100 bases:
>100_bases CTTATTCAGGTTTAACACGGAATAAGAAATCCTCTACCATTGTCGCAAATATTTTTGATTGTTCAATTTGCAAATTATGT CCTGCAAAATCAAGGATAGC
Product: ImpB/MucB/SamB family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MRRVVIFYVLILNRFFASVECVKRRLNPLDAYLVVMSNAERAGGLVLAATPKMKQDHHIKTGSRMYELPTWDKRIIIAPP RMKLYLKVNAMIQAIFKRYVPAEFIHVYSIDECFLDITGSHLLFGSTEEIVRKIQRDILEELRLYVTVGIGDNPLLAKLA LDNVAKNRDDGIAEWRYADVPETIWKIRHLDDVCGIGRRTVVRLQKMGIFNMYQLSQTPPPVLKKAMGVIGEQLYYHAHG IDYSLLNEKYVPVSKSYGKSQILERDYHASAEVEIVIREMVEEVAMRLRQNHVDTAVIHLSIGYSKYSIKKGFSHQAKIP STSSSHALIPYFLQLFRRYDEREPVRSIAISCGKITLKTGLQLNLFEDTSHTLNQEQLEITVDKIRTRYGFKSLMHASSL LNGATGLKRSEMVGGHKG
Sequences:
>Translated_418_residues MRRVVIFYVLILNRFFASVECVKRRLNPLDAYLVVMSNAERAGGLVLAATPKMKQDHHIKTGSRMYELPTWDKRIIIAPP RMKLYLKVNAMIQAIFKRYVPAEFIHVYSIDECFLDITGSHLLFGSTEEIVRKIQRDILEELRLYVTVGIGDNPLLAKLA LDNVAKNRDDGIAEWRYADVPETIWKIRHLDDVCGIGRRTVVRLQKMGIFNMYQLSQTPPPVLKKAMGVIGEQLYYHAHG IDYSLLNEKYVPVSKSYGKSQILERDYHASAEVEIVIREMVEEVAMRLRQNHVDTAVIHLSIGYSKYSIKKGFSHQAKIP STSSSHALIPYFLQLFRRYDEREPVRSIAISCGKITLKTGLQLNLFEDTSHTLNQEQLEITVDKIRTRYGFKSLMHASSL LNGATGLKRSEMVGGHKG >Mature_418_residues MRRVVIFYVLILNRFFASVECVKRRLNPLDAYLVVMSNAERAGGLVLAATPKMKQDHHIKTGSRMYELPTWDKRIIIAPP RMKLYLKVNAMIQAIFKRYVPAEFIHVYSIDECFLDITGSHLLFGSTEEIVRKIQRDILEELRLYVTVGIGDNPLLAKLA LDNVAKNRDDGIAEWRYADVPETIWKIRHLDDVCGIGRRTVVRLQKMGIFNMYQLSQTPPPVLKKAMGVIGEQLYYHAHG IDYSLLNEKYVPVSKSYGKSQILERDYHASAEVEIVIREMVEEVAMRLRQNHVDTAVIHLSIGYSKYSIKKGFSHQAKIP STSSSHALIPYFLQLFRRYDEREPVRSIAISCGKITLKTGLQLNLFEDTSHTLNQEQLEITVDKIRTRYGFKSLMHASSL LNGATGLKRSEMVGGHKG
Specific function: Poorly Processive, Error-Prone DNA Polymerase Involved In Untargeted Mutagenesis. Copies Undamaged DNA At Stalled Replication Forks, Which Arise In Vivo From Mismatched Or Misaligned Primer Ends. These Misaligned Primers Can Be Extended By Poliv. Exhibits
COG id: COG0389
COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 umuC domain [H]
Homologues:
Organism=Escherichia coli, GI1786425, Length=281, Percent_Identity=28.1138790035587, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1787432, Length=421, Percent_Identity=24.7030878859857, Blast_Score=83, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017962 - InterPro: IPR017961 - InterPro: IPR001126 - InterPro: IPR017963 [H]
Pfam domain/function: PF00817 IMS [H]
EC number: 2.7.7.7 [C]
Molecular weight: Translated: 47796; Mature: 47796
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: PS50173 UMUC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVVIFYVLILNRFFASVECVKRRLNPLDAYLVVMSNAERAGGLVLAATPKMKQDHHIK CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCCCCEEEEECCCCCCCCCCC TGSRMYELPTWDKRIIIAPPRMKLYLKVNAMIQAIFKRYVPAEFIHVYSIDECFLDITGS CCCEEEECCCCCCEEEEECCCEEEEEEHHHHHHHHHHHCCCHHHEEEEEHHHHHHCCCCC HLLFGSTEEIVRKIQRDILEELRLYVTVGIGDNPLLAKLALDNVAKNRDDGIAEWRYADV EEEECCHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEECCC PETIWKIRHLDDVCGIGRRTVVRLQKMGIFNMYQLSQTPPPVLKKAMGVIGEQLYYHAHG HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHEHHCCCCCHHHHHHHHHHHHHHHHHHCCC IDYSLLNEKYVPVSKSYGKSQILERDYHASAEVEIVIREMVEEVAMRLRQNHVDTAVIHL CCHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE SIGYSKYSIKKGFSHQAKIPSTSSSHALIPYFLQLFRRYDEREPVRSIAISCGKITLKTG EECCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEECC LQLNLFEDTSHTLNQEQLEITVDKIRTRYGFKSLMHASSLLNGATGLKRSEMVGGHKG CEEEEECCCCCCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCC >Mature Secondary Structure MRRVVIFYVLILNRFFASVECVKRRLNPLDAYLVVMSNAERAGGLVLAATPKMKQDHHIK CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEEECCCCCCCEEEEECCCCCCCCCCC TGSRMYELPTWDKRIIIAPPRMKLYLKVNAMIQAIFKRYVPAEFIHVYSIDECFLDITGS CCCEEEECCCCCCEEEEECCCEEEEEEHHHHHHHHHHHCCCHHHEEEEEHHHHHHCCCCC HLLFGSTEEIVRKIQRDILEELRLYVTVGIGDNPLLAKLALDNVAKNRDDGIAEWRYADV EEEECCHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEECCC PETIWKIRHLDDVCGIGRRTVVRLQKMGIFNMYQLSQTPPPVLKKAMGVIGEQLYYHAHG HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHEHHCCCCCHHHHHHHHHHHHHHHHHHCCC IDYSLLNEKYVPVSKSYGKSQILERDYHASAEVEIVIREMVEEVAMRLRQNHVDTAVIHL CCHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE SIGYSKYSIKKGFSHQAKIPSTSSSHALIPYFLQLFRRYDEREPVRSIAISCGKITLKTG EECCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCEEEEECC LQLNLFEDTSHTLNQEQLEITVDKIRTRYGFKSLMHASSLLNGATGLKRSEMVGGHKG CEEEEECCCCCCCCHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9722542; 9384377 [H]