| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is 116873131
Identifier: 116873131
GI number: 116873131
Start: 1738755
End: 1739720
Strand: Direct
Name: 116873131
Synonym: lwe1715
Alternate gene names: NA
Gene position: 1738755-1739720 (Clockwise)
Preceding gene: 116873128
Following gene: 116873133
Centisome position: 61.79
GC content: 36.34
Gene sequence:
>966_bases ATGAAAGAATTATTAAGCTTACTCAAAGAAGGTAATAAATCAGCTTTAACAGCTGCACTTGTTAATACAATTGTGTCTAT TATAAAAGGTGTCACTTATTTTTTTACAGGAAATATTGCGATGTTTGCAGAAACCTTACATAGTCTTGGCGATGCAGCGA ATCAGTTTTTCGTTTTTATTGGTTCTGCCTTAAGTAAAAAACGACCGACAAAACGATTTCCAAATGGTTTTGGACGAATG GTTAATTTAGTATTACTTGGCGCAGTAATAGTTGTAGGAATTATGGCATTTGAAACCATTCGAGAAGGTTTTGCACATAT TATCCATCCAACTAGTTCTACCGGTTTTATTATTAACCTTGTAGTACTTTTACTTTGTACGGTATTGGAATTCTCTGTTC TAGTGAAGGCAATGCATGAGATTGCTCATGATGTTGGTCTAGAATCAAAAGGATTTACATTATTTAAAGATAGTATTCGT AATCTTGGTAAGGCAAAAGCAGCAACAAAACTTGTGTTTTTAGAAGACTCTGTTGCAACTGGTGGTGGACTTTTAGCGGT AATTGCGGTCATTATTTCTCACTATACCCCTTTTCACCAAGCGGAAGGTATTGCTTCAATGTTAATTGGTGTCATGATGT TTATCGTTGTTGGTAAAGTATTTTTAGATAATGCGGCTGGAGTTATTGGTGAATCTGATCAAAGCATGCATTTAACTGTA GGACAATTGGTGATGAGTGATCCTGATGTGCGAGATATTCAAGTACTTACGGTATTAAAAGAAGGCGATGTTTTTCATGT TGATGTGGAAGTTGAATTAGATCCGTCCCTTACTCTAGCAGAAGTCGATGATATTAAAGACCGTCTAGAAGAAAATATTG GACAATTGCGCGGAGTTGCTGATGTACTGATTTCTTTTGATGAAGATGATGCGATTCGTAATTGGGAATACGGCGACGGA CGATAG
Upstream 100 bases:
>100_bases TTACATTTTTGCAAGCTTCTGTAAGGGTTTTAGGTTCTTATTTTCATTTTACCCAAAAAAATGCTACAATTTCTTAATGA TAATTGTGGAGGAGACTAGG
Downstream 100 bases:
>100_bases AATATGAAAAGCCAAGTGCGCGAAATGCGACACTTGGCTTTTTTTAGTCTTCTGGATTAATGATTGCAAGTACTTGATGA TCTTCCCAAGTTCCATTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: Cation Efflux Family Protein; Cation Transporter; Co/Zn/Cd Cation Transporter; Cation Efflux Protein; Cation Transporter Permease Component; Cation Efflux Protein Homolog; Cation Diffusion Facilitator Family Protein
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MKELLSLLKEGNKSALTAALVNTIVSIIKGVTYFFTGNIAMFAETLHSLGDAANQFFVFIGSALSKKRPTKRFPNGFGRM VNLVLLGAVIVVGIMAFETIREGFAHIIHPTSSTGFIINLVVLLLCTVLEFSVLVKAMHEIAHDVGLESKGFTLFKDSIR NLGKAKAATKLVFLEDSVATGGGLLAVIAVIISHYTPFHQAEGIASMLIGVMMFIVVGKVFLDNAAGVIGESDQSMHLTV GQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPSLTLAEVDDIKDRLEENIGQLRGVADVLISFDEDDAIRNWEYGDG R
Sequences:
>Translated_321_residues MKELLSLLKEGNKSALTAALVNTIVSIIKGVTYFFTGNIAMFAETLHSLGDAANQFFVFIGSALSKKRPTKRFPNGFGRM VNLVLLGAVIVVGIMAFETIREGFAHIIHPTSSTGFIINLVVLLLCTVLEFSVLVKAMHEIAHDVGLESKGFTLFKDSIR NLGKAKAATKLVFLEDSVATGGGLLAVIAVIISHYTPFHQAEGIASMLIGVMMFIVVGKVFLDNAAGVIGESDQSMHLTV GQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPSLTLAEVDDIKDRLEENIGQLRGVADVLISFDEDDAIRNWEYGDG R >Mature_321_residues MKELLSLLKEGNKSALTAALVNTIVSIIKGVTYFFTGNIAMFAETLHSLGDAANQFFVFIGSALSKKRPTKRFPNGFGRM VNLVLLGAVIVVGIMAFETIREGFAHIIHPTSSTGFIINLVVLLLCTVLEFSVLVKAMHEIAHDVGLESKGFTLFKDSIR NLGKAKAATKLVFLEDSVATGGGLLAVIAVIISHYTPFHQAEGIASMLIGVMMFIVVGKVFLDNAAGVIGESDQSMHLTV GQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPSLTLAEVDDIKDRLEENIGQLRGVADVLISFDEDDAIRNWEYGDG R
Specific function: Unknown
COG id: COG0053
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI57164948, Length=244, Percent_Identity=23.7704918032787, Blast_Score=76, Evalue=4e-14, Organism=Caenorhabditis elegans, GI115534117, Length=231, Percent_Identity=24.6753246753247, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24653141, Length=218, Percent_Identity=27.5229357798165, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24653143, Length=218, Percent_Identity=27.5229357798165, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34778; Mature: 34778
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKELLSLLKEGNKSALTAALVNTIVSIIKGVTYFFTGNIAMFAETLHSLGDAANQFFVFI CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH GSALSKKRPTKRFPNGFGRMVNLVLLGAVIVVGIMAFETIREGFAHIIHPTSSTGFIINL HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH VVLLLCTVLEFSVLVKAMHEIAHDVGLESKGFTLFKDSIRNLGKAKAATKLVFLEDSVAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCC GGGLLAVIAVIISHYTPFHQAEGIASMLIGVMMFIVVGKVFLDNAAGVIGESDQSMHLTV CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHH GQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPSLTLAEVDDIKDRLEENIGQLRGVA HHHHHCCCCCCCEEEEEEEECCCEEEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHH DVLISFDEDDAIRNWEYGDGR HHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKELLSLLKEGNKSALTAALVNTIVSIIKGVTYFFTGNIAMFAETLHSLGDAANQFFVFI CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH GSALSKKRPTKRFPNGFGRMVNLVLLGAVIVVGIMAFETIREGFAHIIHPTSSTGFIINL HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH VVLLLCTVLEFSVLVKAMHEIAHDVGLESKGFTLFKDSIRNLGKAKAATKLVFLEDSVAT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCC GGGLLAVIAVIISHYTPFHQAEGIASMLIGVMMFIVVGKVFLDNAAGVIGESDQSMHLTV CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEHH GQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPSLTLAEVDDIKDRLEENIGQLRGVA HHHHHCCCCCCCEEEEEEEECCCEEEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHH DVLISFDEDDAIRNWEYGDGR HHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA