| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
Click here to switch to the map view.
The map label for this gene is 116872660
Identifier: 116872660
GI number: 116872660
Start: 1244800
End: 1245336
Strand: Direct
Name: 116872660
Synonym: lwe1244
Alternate gene names: NA
Gene position: 1244800-1245336 (Clockwise)
Preceding gene: 116872659
Following gene: 116872661
Centisome position: 44.23
GC content: 31.84
Gene sequence:
>537_bases ATGAATAAAACGGGAGTAAAAATTTTAATTTTCACAGTATTATTGTTAACAATCTTGATTCCAACAAATGCAAATGCTTA TACTAAAAACGGTCATTATATGACTAAAGCGGCGGCGAAAAATTTCAAAATTTATATTAATGGCTCTGCCGCTGGTTATA AAAGCATAATAATCAATGGTGCAAAAGTGTGGAATGTTTCGCCTTATTTGAATACTGTAAGTTTAGGAAATGATGTGAAT CCTCATTTTACAGTAAGTACTTCAAAAGTGGATAGAGGTAGCATAGTTGCAACAAATCAGCCCTGGATATTAAAATCGAC ACCATCTATACGGGTTAAAAGTGAAATTACTACTTATAATGCTTTTAAATCATTATCCACTAGTGATAAGACAGAGACAA TAGCTCATGAATTTGGACATGGCTTTGGATTAGGGCACATAACCACAAAGAATGGAATTATGTTAGCTAAGGGATTTACG AAGAAAATAAAACCGCAAGCAGACGATTTAAATGGTATTAAATCTATATATAAATAA
Upstream 100 bases:
>100_bases TTCATGACAAGAAACGGACATTTCATTACATTTTTGGTTATACATTATATATTTTTGATATCATTTTGAGGTAAGAAAAA TTATAAAAGGAGACTACATC
Downstream 100 bases:
>100_bases AAGGAGGTTTGAAAATTGAAGGGTAAATTATTAGTTGTTATTAGTTTGGCAAGTATATCTTTATTTACGGCCTGTTCGAA TAATGAAAATGTGGATGAAA
Product: putative secreted protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 178
Protein sequence:
>178_residues MNKTGVKILIFTVLLLTILIPTNANAYTKNGHYMTKAAAKNFKIYINGSAAGYKSIIINGAKVWNVSPYLNTVSLGNDVN PHFTVSTSKVDRGSIVATNQPWILKSTPSIRVKSEITTYNAFKSLSTSDKTETIAHEFGHGFGLGHITTKNGIMLAKGFT KKIKPQADDLNGIKSIYK
Sequences:
>Translated_178_residues MNKTGVKILIFTVLLLTILIPTNANAYTKNGHYMTKAAAKNFKIYINGSAAGYKSIIINGAKVWNVSPYLNTVSLGNDVN PHFTVSTSKVDRGSIVATNQPWILKSTPSIRVKSEITTYNAFKSLSTSDKTETIAHEFGHGFGLGHITTKNGIMLAKGFT KKIKPQADDLNGIKSIYK >Mature_178_residues MNKTGVKILIFTVLLLTILIPTNANAYTKNGHYMTKAAAKNFKIYINGSAAGYKSIIINGAKVWNVSPYLNTVSLGNDVN PHFTVSTSKVDRGSIVATNQPWILKSTPSIRVKSEITTYNAFKSLSTSDKTETIAHEFGHGFGLGHITTKNGIMLAKGFT KKIKPQADDLNGIKSIYK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19394; Mature: 19394
Theoretical pI: Translated: 10.60; Mature: 10.60
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKTGVKILIFTVLLLTILIPTNANAYTKNGHYMTKAAAKNFKIYINGSAAGYKSIIING CCCCCHHHHHHHHHHHHHEECCCCCEEECCCCEEEEECCCCEEEEEECCCCCEEEEEEEC AKVWNVSPYLNTVSLGNDVNPHFTVSTSKVDRGSIVATNQPWILKSTPSIRVKSEITTYN EEEEEECCCEEEEECCCCCCCCEEEECCCCCCCCEEECCCCEEEECCCCEEEEEEEEEHH AFKSLSTSDKTETIAHEFGHGFGLGHITTKNGIMLAKGFTKKIKPQADDLNGIKSIYK HHHCCCCCCHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHHCC >Mature Secondary Structure MNKTGVKILIFTVLLLTILIPTNANAYTKNGHYMTKAAAKNFKIYINGSAAGYKSIIING CCCCCHHHHHHHHHHHHHEECCCCCEEECCCCEEEEECCCCEEEEEECCCCCEEEEEEEC AKVWNVSPYLNTVSLGNDVNPHFTVSTSKVDRGSIVATNQPWILKSTPSIRVKSEITTYN EEEEEECCCEEEEECCCCCCCCEEEECCCCCCCCEEECCCCEEEECCCCEEEEEEEEEHH AFKSLSTSDKTETIAHEFGHGFGLGHITTKNGIMLAKGFTKKIKPQADDLNGIKSIYK HHHCCCCCCHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA