| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
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The map label for this gene is ymfN [H]
Identifier: 116872638
GI number: 116872638
Start: 1226026
End: 1227777
Strand: Direct
Name: ymfN [H]
Synonym: lwe1222
Alternate gene names: 116872638
Gene position: 1226026-1227777 (Clockwise)
Preceding gene: 116872637
Following gene: 116872639
Centisome position: 43.57
GC content: 34.47
Gene sequence:
>1752_bases ATGAGTTTAAAAGATTTTACTAATCATGCTAGTGTGATGAATTATGTAAACGAAGTAGCGAAAGGTAAGAAAATAGCAGG AAAAGAAATCCAACAAGCGGCAAAAAGATTTAAAAAGGATTTAAAAAATAAAGAATATGAATTCAATCCTAAGGACGCAG AATTTGTGATTGGCATTATTGAAAGAACGTTTGTTCACGATCAAGGTGAACGGATTGACGGAACACCGCTTCGAGGAACA CCGTTTATTTTAGAACCGTGGCAAAAATTTATTATTTATTCCTTATTGGGATTTTATATAAAAGGTACAATCATTAGGCG TTTCAAAGAAGCGTTTATTTTTTTACCTCGAAAAAATGGTAAAACAAGATTTGTTGCTGCATTATCGTGGGCTTTAGCAC TTTTAGAAAGAAAATCAGGTTCTAAAATTTATATCGTCGGGGCAGCGTTGGAACAATCGTTACAAAGTTTTAATTTTATT AATTTTAATATTAAAGAAATGGGAGAAGAAAATACATTTCGTGTTTTAGATAATAATCAAGAACATAGTATTTCTGGTGA CTTTGGAGATGGTTCTTTATATATCAAAGCATTAGCGGCTAATCCAGACCGCCAAGATTCTCTAAACTGTAATGTAGGAA TTGCCGACGAGTTGCACGCTTATAAAACACCAAAACAATACAACATTATTAAAGAAGCAATGAAAGCTTACACAAACAAG TTGATGGTTGGTATAACAACAGCTGGTGACAATATGAGTTCCTTTTGTTATCAACGTTTACAGTATTGTAAAAAGATTTT AGACGACACTGTGACAGATGAAGCTTATTTTGTTTTTATAGCGAAAGCAGATGAGGACGAAAAAGGCGAAGTGGATTATA CGGATCCATTACAACACGAAAAAGCAAATCCTAATTATGGAATTACAATCAGACCAAGTGATATGAAAAATGACAGTTTA CAAGCGCAAAATGACCCGCAGCAAAGAAAAGACTTTTTGTCTAAATCATTAAATATATATACTAGCGCAATGAAAGCATA TTTCAACATTGATGAATTTAAAGCATCAGATTCAAAGTATGATTGGACTTTAGAAGAACTAGCTAAATTTCCTATTAAAT GGTATGGCGGTGCTGACTTGGCGAAACTTCATGATTTGACAGCGGCGGCACTGTATGGAAGGCACATCACTGATGACGGT GTAGAAGTAGATATCGTCATCACACACGCTTTCTTTCCTATTATAATGGCAAATAAAAAAGCCGACGAAGACAATATCCC TTTATTTGGTTGGAAGGATGATGGGGTGTTAACAATGACGAATACGCCGACGACTAATTTCGCAGTTATTGTTAATTGGT TTAAAGAGATGAAAAATAAAGGTTTCGACATTAAACTTGTAGGCTTTGATAAAAAATTCGGTCGTGAATTCTTTTATTTA ATGAAGAAAAGCGGCATTAAAATAGTAGACCAACCACAATATTTTTACAAAAAGTCAGAAGGTTTCAGACGAATAGAAAC AAAAGCAAAAGATGGACATTTCTATTACTGTCACAATCAATCATTTGAGTATTGTGTTCAAAATGTGCGTGCTATCGAAA AAACTGACGACATGATTCAATACGAAAAAGTGGATGGCGATGGAGGTTCTCAGCGTATTGACTTGTTTGATGCTGCCGTA TTTGGAGCAGTGCAGATGTTAGAGGATATACAAATGAGTGCAGTAGCTAGTAAATGGCTCAATTCGAATTGA
Upstream 100 bases:
>100_bases CTTATTCAGACCGATTGTGTTTAAATCCTAAAGCTATTGAAAACATCACAACTGAGAACAAAAAACAATCCAGTTTAGCG GATATATTGAGTGAAATGCG
Downstream 100 bases:
>100_bases GGGAGGTGAACAAATGAATTGGAGAATTAAAGTCCCGTGGAAAAAGAAAAGGTCAAAAGATTTCGGGTTTGTTTGGAATG GTGAATCATATTCTTTTGCT
Product: phage-related terminase protein large subunit, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 583; Mature: 582
Protein sequence:
>583_residues MSLKDFTNHASVMNYVNEVAKGKKIAGKEIQQAAKRFKKDLKNKEYEFNPKDAEFVIGIIERTFVHDQGERIDGTPLRGT PFILEPWQKFIIYSLLGFYIKGTIIRRFKEAFIFLPRKNGKTRFVAALSWALALLERKSGSKIYIVGAALEQSLQSFNFI NFNIKEMGEENTFRVLDNNQEHSISGDFGDGSLYIKALAANPDRQDSLNCNVGIADELHAYKTPKQYNIIKEAMKAYTNK LMVGITTAGDNMSSFCYQRLQYCKKILDDTVTDEAYFVFIAKADEDEKGEVDYTDPLQHEKANPNYGITIRPSDMKNDSL QAQNDPQQRKDFLSKSLNIYTSAMKAYFNIDEFKASDSKYDWTLEELAKFPIKWYGGADLAKLHDLTAAALYGRHITDDG VEVDIVITHAFFPIIMANKKADEDNIPLFGWKDDGVLTMTNTPTTNFAVIVNWFKEMKNKGFDIKLVGFDKKFGREFFYL MKKSGIKIVDQPQYFYKKSEGFRRIETKAKDGHFYYCHNQSFEYCVQNVRAIEKTDDMIQYEKVDGDGGSQRIDLFDAAV FGAVQMLEDIQMSAVASKWLNSN
Sequences:
>Translated_583_residues MSLKDFTNHASVMNYVNEVAKGKKIAGKEIQQAAKRFKKDLKNKEYEFNPKDAEFVIGIIERTFVHDQGERIDGTPLRGT PFILEPWQKFIIYSLLGFYIKGTIIRRFKEAFIFLPRKNGKTRFVAALSWALALLERKSGSKIYIVGAALEQSLQSFNFI NFNIKEMGEENTFRVLDNNQEHSISGDFGDGSLYIKALAANPDRQDSLNCNVGIADELHAYKTPKQYNIIKEAMKAYTNK LMVGITTAGDNMSSFCYQRLQYCKKILDDTVTDEAYFVFIAKADEDEKGEVDYTDPLQHEKANPNYGITIRPSDMKNDSL QAQNDPQQRKDFLSKSLNIYTSAMKAYFNIDEFKASDSKYDWTLEELAKFPIKWYGGADLAKLHDLTAAALYGRHITDDG VEVDIVITHAFFPIIMANKKADEDNIPLFGWKDDGVLTMTNTPTTNFAVIVNWFKEMKNKGFDIKLVGFDKKFGREFFYL MKKSGIKIVDQPQYFYKKSEGFRRIETKAKDGHFYYCHNQSFEYCVQNVRAIEKTDDMIQYEKVDGDGGSQRIDLFDAAV FGAVQMLEDIQMSAVASKWLNSN >Mature_582_residues SLKDFTNHASVMNYVNEVAKGKKIAGKEIQQAAKRFKKDLKNKEYEFNPKDAEFVIGIIERTFVHDQGERIDGTPLRGTP FILEPWQKFIIYSLLGFYIKGTIIRRFKEAFIFLPRKNGKTRFVAALSWALALLERKSGSKIYIVGAALEQSLQSFNFIN FNIKEMGEENTFRVLDNNQEHSISGDFGDGSLYIKALAANPDRQDSLNCNVGIADELHAYKTPKQYNIIKEAMKAYTNKL MVGITTAGDNMSSFCYQRLQYCKKILDDTVTDEAYFVFIAKADEDEKGEVDYTDPLQHEKANPNYGITIRPSDMKNDSLQ AQNDPQQRKDFLSKSLNIYTSAMKAYFNIDEFKASDSKYDWTLEELAKFPIKWYGGADLAKLHDLTAAALYGRHITDDGV EVDIVITHAFFPIIMANKKADEDNIPLFGWKDDGVLTMTNTPTTNFAVIVNWFKEMKNKGFDIKLVGFDKKFGREFFYLM KKSGIKIVDQPQYFYKKSEGFRRIETKAKDGHFYYCHNQSFEYCVQNVRAIEKTDDMIQYEKVDGDGGSQRIDLFDAAVF GAVQMLEDIQMSAVASKWLNSN
Specific function: Unknown
COG id: COG4626
COG function: function code R; Phage terminase-like protein, large subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage terminase family [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000524 - InterPro: IPR005021 - InterPro: IPR011991 [H]
Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]
EC number: NA
Molecular weight: Translated: 66747; Mature: 66615
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKDFTNHASVMNYVNEVAKGKKIAGKEIQQAAKRFKKDLKNKEYEFNPKDAEFVIGII CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH ERTFVHDQGERIDGTPLRGTPFILEPWQKFIIYSLLGFYIKGTIIRRFKEAFIFLPRKNG HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC KTRFVAALSWALALLERKSGSKIYIVGAALEQSLQSFNFINFNIKEMGEENTFRVLDNNQ CCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCEEEEEHHHCCCCCCEEEECCCC EHSISGDFGDGSLYIKALAANPDRQDSLNCNVGIADELHAYKTPKQYNIIKEAMKAYTNK CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCC LMVGITTAGDNMSSFCYQRLQYCKKILDDTVTDEAYFVFIAKADEDEKGEVDYTDPLQHE EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC KANPNYGITIRPSDMKNDSLQAQNDPQQRKDFLSKSLNIYTSAMKAYFNIDEFKASDSKY CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCC DWTLEELAKFPIKWYGGADLAKLHDLTAAALYGRHITDDGVEVDIVITHAFFPIIMANKK CCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEHHHHHHEECCC ADEDNIPLFGWKDDGVLTMTNTPTTNFAVIVNWFKEMKNKGFDIKLVGFDKKFGREFFYL CCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH MKKSGIKIVDQPQYFYKKSEGFRRIETKAKDGHFYYCHNQSFEYCVQNVRAIEKTDDMIQ HHHCCCEEEECCHHHHHHCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHEE YEKVDGDGGSQRIDLFDAAVFGAVQMLEDIQMSAVASKWLNSN EEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SLKDFTNHASVMNYVNEVAKGKKIAGKEIQQAAKRFKKDLKNKEYEFNPKDAEFVIGII CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH ERTFVHDQGERIDGTPLRGTPFILEPWQKFIIYSLLGFYIKGTIIRRFKEAFIFLPRKNG HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC KTRFVAALSWALALLERKSGSKIYIVGAALEQSLQSFNFINFNIKEMGEENTFRVLDNNQ CCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCEEEEEHHHCCCCCCEEEECCCC EHSISGDFGDGSLYIKALAANPDRQDSLNCNVGIADELHAYKTPKQYNIIKEAMKAYTNK CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCC LMVGITTAGDNMSSFCYQRLQYCKKILDDTVTDEAYFVFIAKADEDEKGEVDYTDPLQHE EEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC KANPNYGITIRPSDMKNDSLQAQNDPQQRKDFLSKSLNIYTSAMKAYFNIDEFKASDSKY CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCC DWTLEELAKFPIKWYGGADLAKLHDLTAAALYGRHITDDGVEVDIVITHAFFPIIMANKK CCCHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEHHHHHHEECCC ADEDNIPLFGWKDDGVLTMTNTPTTNFAVIVNWFKEMKNKGFDIKLVGFDKKFGREFFYL CCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH MKKSGIKIVDQPQYFYKKSEGFRRIETKAKDGHFYYCHNQSFEYCVQNVRAIEKTDDMIQ HHHCCCEEEECCHHHHHHCCCCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHEE YEKVDGDGGSQRIDLFDAAVFGAVQMLEDIQMSAVASKWLNSN EEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]