| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
Click here to switch to the map view.
The map label for this gene is 116872623
Identifier: 116872623
GI number: 116872623
Start: 1215460
End: 1215981
Strand: Direct
Name: 116872623
Synonym: lwe1207
Alternate gene names: NA
Gene position: 1215460-1215981 (Clockwise)
Preceding gene: 116872622
Following gene: 116872624
Centisome position: 43.19
GC content: 37.16
Gene sequence:
>522_bases ATGAAAAAAGAAGATATAACATTTCTAAATGAGTTGCAGCAAGAACTAAACACACAATCAAACTGTGGGAACGCATCGCC TGTGTTTTGGGTAATACGCCAGTGCGAAAAACAAATTACTGATTCAGATTTCGGAGAAGAGACGCTATATATTCACAGTG ATGGCGATTATTTGGAATTTGAAAAACTTGATGAACTTCTAGAATTTTTAAGCGAGGGTTCAGAATTTGATGCAGTAAAG GATTGCGAAACGCTGGATGATGCTTTTGACATCCTTCTAAACGATTTTAACGAAGATGGTTACTTCGCAAGATTCTCAGC TACAGAAGTAGCCGTAGTAAAACAAGACACATTTTTCATTACTCATAAGGAAGCTTTAGAACACATCAAAAAAAATAGGC GTCATTATAATTCAACTGTACACACATATGCAATGACAGCGTGGCGTTCACCAGAGGTCGAAAAACTCTGGGAGATTCTT AGAGAAGCAGATTTTAATAAATTGTTGGAGGTGGCGGAATAA
Upstream 100 bases:
>100_bases AGCCTAGTTATGTGTTGAACCAAAATGGCAGTTCGTTAGTAAAGCATATGGAAGTTATCGGCAACATACATGAAAATCCG GAATTATTGGAGGGAATGGA
Downstream 100 bases:
>100_bases TGTGTGAGTATTGCGAGGAAAATTTCAGAAAACGTGGCGAAATCACAACAGATGAAGGTCATGAAATACGTATTGACTGG GATAATGATTTAGCAATACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 173; Mature: 173
Protein sequence:
>173_residues MKKEDITFLNELQQELNTQSNCGNASPVFWVIRQCEKQITDSDFGEETLYIHSDGDYLEFEKLDELLEFLSEGSEFDAVK DCETLDDAFDILLNDFNEDGYFARFSATEVAVVKQDTFFITHKEALEHIKKNRRHYNSTVHTYAMTAWRSPEVEKLWEIL READFNKLLEVAE
Sequences:
>Translated_173_residues MKKEDITFLNELQQELNTQSNCGNASPVFWVIRQCEKQITDSDFGEETLYIHSDGDYLEFEKLDELLEFLSEGSEFDAVK DCETLDDAFDILLNDFNEDGYFARFSATEVAVVKQDTFFITHKEALEHIKKNRRHYNSTVHTYAMTAWRSPEVEKLWEIL READFNKLLEVAE >Mature_173_residues MKKEDITFLNELQQELNTQSNCGNASPVFWVIRQCEKQITDSDFGEETLYIHSDGDYLEFEKLDELLEFLSEGSEFDAVK DCETLDDAFDILLNDFNEDGYFARFSATEVAVVKQDTFFITHKEALEHIKKNRRHYNSTVHTYAMTAWRSPEVEKLWEIL READFNKLLEVAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20281; Mature: 20281
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKEDITFLNELQQELNTQSNCGNASPVFWVIRQCEKQITDSDFGEETLYIHSDGDYLEF CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECH EKLDELLEFLSEGSEFDAVKDCETLDDAFDILLNDFNEDGYFARFSATEVAVVKQDTFFI HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCEEEE THKEALEHIKKNRRHYNSTVHTYAMTAWRSPEVEKLWEILREADFNKLLEVAE EHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHCC >Mature Secondary Structure MKKEDITFLNELQQELNTQSNCGNASPVFWVIRQCEKQITDSDFGEETLYIHSDGDYLEF CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEECH EKLDELLEFLSEGSEFDAVKDCETLDDAFDILLNDFNEDGYFARFSATEVAVVKQDTFFI HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCEEEE THKEALEHIKKNRRHYNSTVHTYAMTAWRSPEVEKLWEILREADFNKLLEVAE EHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA