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The map label for this gene is ysdC [H]

Identifier: 116872589

GI number: 116872589

Start: 1179160

End: 1180239

Strand: Direct

Name: ysdC [H]

Synonym: lwe1173

Alternate gene names: 116872589

Gene position: 1179160-1180239 (Clockwise)

Preceding gene: 116872588

Following gene: 116872590

Centisome position: 41.9

GC content: 40.65

Gene sequence:

>1080_bases
ATGGATGAACAATTAAAGATGTTAAAAGCATTAACGGACGCAAAAGGTATCCCCGGTAATGAGCGAGCAGTTAGAAATGT
ATTTCGTGAATATATCGAACCGTTAGCTGATAGTTTTGAAACAGATGGCCTAGGTAGCGCGGTCGCAAAAAAAGTCGGAA
ATGAAGATGGACCTAAAATCATGATTGCGGGCCATTTAGATGAAGTTGGCTTTATGGTAACTCAAATTGATGATAAAGGT
TTTATTAAATTTCAAACAGTGGGCGGCTGGGTTTCCCAGGTAATGCTTGCACAAAAAGTTACTATTGTAACCCGTTCAGG
CGAAGCAATTACAGGTGTTATTGGCTCTAAACCACCGCATGTAATGACCGCAGCTGAACGTCAAAAATCTTTTGACATCA
AGGATATGTTTATTGATATTGGTGCAGTTGATAAAGCAGAAGTAGAAAGTTATGGTATTCGTCCTGGTGATATGATTGTG
CCAGCATTTGATTTCACTGTGATGAAAAACGAAAAATTCTTACTTGCGAAAGCTTGGGATAATCGTATCGGACTCGCTAT
TGCAATTGAAGTTCTTAAAAATCTACAAAAAGAGCAACATCCGAATATCGTTTATGGTGTTGGAACCGTTCAAGAAGAAG
TAGGATTGCGCGGCGCCAAAACTGCTGCACATTTCGTTCAACCGGATATTGGTTTTGCTGTTGATGTTGGTATCGCGGGA
GATACTCCTGGCGTGACGGACAAAGAAGCAATGAGCAAAATGGGTGAAGGACCACAAATCGTTATTTATGATGCTTCCAT
GGTGGCACATGCAGGTCTTCGTGATTTTGTGACAGATGTAGCGGACGAACTCTCTATTCCATACCAATTTGAAGCTATTC
CAATGGGTGGGACTGATTCTGGTTCGATTCATTTGACTGGAAACGGAATCCCATCGCTATCTATTACCATCGCGACACGC
TATATTCATTCTCATTCGTCCATGCTACACCGCGACGATTTTGAAAATGCAGTAAAACTAATTACAGAAGTAGTCAAACG
TTTAGATAAAGAAAAAGTAACAGAAATTCGCCTAGGTTGA

Upstream 100 bases:

>100_bases
AGTAAAAGCTGGGAATTAACTCAGCTTTTTTTGCGTTTTCAAAGGAATTTTAGAAAGAAACTGTTATAATGGAAAAGGAG
TTTATAAGGAGGTTATTTAT

Downstream 100 bases:

>100_bases
GTTTCGAGAAAAGAGGACAACTTTAATGGAACAGATTCAATCAATAAAAAACGACCGTGTTAAAACATGGAAAAAATTGC
AAACGAGAAAAGGCCGCGAC

Product: aminopeptidase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGNEDGPKIMIAGHLDEVGFMVTQIDDKG
FIKFQTVGGWVSQVMLAQKVTIVTRSGEAITGVIGSKPPHVMTAAERQKSFDIKDMFIDIGAVDKAEVESYGIRPGDMIV
PAFDFTVMKNEKFLLAKAWDNRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDSGSIHLTGNGIPSLSITIATR
YIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG

Sequences:

>Translated_359_residues
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGNEDGPKIMIAGHLDEVGFMVTQIDDKG
FIKFQTVGGWVSQVMLAQKVTIVTRSGEAITGVIGSKPPHVMTAAERQKSFDIKDMFIDIGAVDKAEVESYGIRPGDMIV
PAFDFTVMKNEKFLLAKAWDNRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDSGSIHLTGNGIPSLSITIATR
YIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG
>Mature_359_residues
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGNEDGPKIMIAGHLDEVGFMVTQIDDKG
FIKFQTVGGWVSQVMLAQKVTIVTRSGEAITGVIGSKPPHVMTAAERQKSFDIKDMFIDIGAVDKAEVESYGIRPGDMIV
PAFDFTVMKNEKFLLAKAWDNRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDSGSIHLTGNGIPSLSITIATR
YIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=352, Percent_Identity=40.3409090909091, Blast_Score=279, Evalue=3e-76,
Organism=Escherichia coli, GI1788727, Length=354, Percent_Identity=34.180790960452, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI87082417, Length=346, Percent_Identity=30.635838150289, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 38971; Mature: 38971

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGNEDGPKI
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEE
MIAGHLDEVGFMVTQIDDKGFIKFQTVGGWVSQVMLAQKVTIVTRSGEAITGVIGSKPPH
EEEECCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHEEEEEEECCCEEEEECCCCCCC
VMTAAERQKSFDIKDMFIDIGAVDKAEVESYGIRPGDMIVPAFDFTVMKNEKFLLAKAWD
EEEHHHHHHCCCHHHHEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEEECCC
NRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
CCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCHHHHHHCCCCCCEEEEEEECC
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDS
CCCCCCCHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
GSIHLTGNGIPSLSITIATRYIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG
CEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCC
>Mature Secondary Structure
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGNEDGPKI
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEE
MIAGHLDEVGFMVTQIDDKGFIKFQTVGGWVSQVMLAQKVTIVTRSGEAITGVIGSKPPH
EEEECCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHEEEEEEECCCEEEEECCCCCCC
VMTAAERQKSFDIKDMFIDIGAVDKAEVESYGIRPGDMIVPAFDFTVMKNEKFLLAKAWD
EEEHHHHHHCCCHHHHEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEEECCC
NRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
CCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCHHHHHHCCCCCCEEEEEEECC
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDS
CCCCCCCHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
GSIHLTGNGIPSLSITIATRYIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG
CEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]