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The map label for this gene is fliR [H]

Identifier: 116872067

GI number: 116872067

Start: 676678

End: 677439

Strand: Direct

Name: fliR [H]

Synonym: lwe0647

Alternate gene names: 116872067

Gene position: 676678-677439 (Clockwise)

Preceding gene: 116872066

Following gene: 116872068

Centisome position: 24.05

GC content: 34.91

Gene sequence:

>762_bases
ATGGAGTTTGAATTTTTTCTTGCTGTTGTGATTGTTTTTAGCCGTGTTGCTAGTTTTTTATTTTTCTTTCCGCTTTTAAA
AGGGCGTAACATTCCAAACAGTGTCAAAGTGGTGTTCGGGATGGCGATTTCTATTCCTGTTGCAACTGGGGTTGATGTTT
CTGGTATTACGACATTGCCTGATTTGCTACTCCGGGTAACATCTGAAGTGGTATTTGGATTAGCACTCGCAAAGTTAGTA
GAAATTATCGCGGTTATTCCAAAAATGGCAGGTTTTATGATTGATTACGATTTAGGATTTTCGCAAGTAAACTTAATTGA
TCCTTCATATGGAACACAAAACTCAATTACTGCTGCGATTTTAGATACCTTTTTTGTTGTGATATTCTTGTCACTTCAAG
GAATGGATTACTTGATTTTTTACTTAATGAAATCGTTTGAATTTACGGCTTCGGTTTCAATTTTATTTGAAAAAGGGTTT
ATTGATTTACTGCTCGGGACACTTGGTTTTGCGCTTGCTTCTGCGGTTTCGATTGCGCTCCCGATTATGGGTAGTATTTT
TATCGTTAATATTATTCTTGCTTTTATTTCAAAGAGCGCTCCGCAAATCAATATTTTTATGAATGCGTTTATTATAAAAA
TTACATTCGGGATTTTCATTCTTGCGTGCGCAGTTCCTATCTTGAGTACGGTTTTTAAAAATTTGACAGATGAGATGATT
CAACAATATGTGTCGTTTTTTGATTATTTACTGAAAAAGTAG

Upstream 100 bases:

>100_bases
TAGTCGCGCTCTTTATTCTTGGACCGTGGATGTTTGAACACATGACGGATTTATTTGTAGGAATCTTTTCCAAATTACCC
CTGATGATTAGGGTGTAAAC

Downstream 100 bases:

>100_bases
GGAGTGGAACCGAGCTTGGCAAAGGATAATAAAACGGAAAAAGCAACGCCACGCCGCATTAAGAAAGCTAGAAACGAAGG
TAATGTGGCAAAAAGTAAAG

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MEFEFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVATGVDVSGITTLPDLLLRVTSEVVFGLALAKLV
EIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIFYLMKSFEFTASVSILFEKGF
IDLLLGTLGFALASAVSIALPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEMI
QQYVSFFDYLLKK

Sequences:

>Translated_253_residues
MEFEFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVATGVDVSGITTLPDLLLRVTSEVVFGLALAKLV
EIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIFYLMKSFEFTASVSILFEKGF
IDLLLGTLGFALASAVSIALPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEMI
QQYVSFFDYLLKK
>Mature_253_residues
MEFEFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVATGVDVSGITTLPDLLLRVTSEVVFGLALAKLV
EIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIFYLMKSFEFTASVSILFEKGF
IDLLLGTLGFALASAVSIALPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEMI
QQYVSFFDYLLKK

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27869; Mature: 27869

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFEFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVATGVDVSGITTLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCHHHHHHH
LDTFFVVIFLSLQGMDYLIFYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEMI
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQYVSFFDYLLKK
HHHHHHHHHHHCC
>Mature Secondary Structure
MEFEFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAISIPVATGVDVSGITTLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
DLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQVNLIDPSYGTQNSITAAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCCCCHHHHHHH
LDTFFVVIFLSLQGMDYLIFYLMKSFEFTASVSILFEKGFIDLLLGTLGFALASAVSIAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGIFILACAVPILSTVFKNLTDEMI
HHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQYVSFFDYLLKK
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]