BacMap

Definition	Listeria welshimeri serovar 6b str. SLCC5334, complete genome.
Accession	NC_008555
Length	2,814,130

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The map label for this gene is yhxD [H]

Identifier: 116872059

GI number: 116872059

Start: 671697

End: 672578

Strand: Direct

Name: yhxD [H]

Synonym: lwe0639

Alternate gene names: 116872059

Gene position: 671697-672578 (Clockwise)

Preceding gene: 116872058

Following gene: 116872060

Centisome position: 23.87

GC content: 37.76

Gene sequence:

>882_bases
ATGACTAACGAAAATCCATTAAATAAATATTATGCAGGAAAATTTGAAAAACAACGACAAGAATATCCTGGACTTGAAAG
TGAAATGACACCAGTACCAGATACCGGTGAATTAAGTTATAAAGGAGCAAACAAACTAACTGGTAAAAAAGCTTTCGTAA
CTGGCGGTGATTCGGGTATAGGTCGAGCTGCAGTTATTGCTTATGCAAGAGAAGGCGCTGATGTGGCGATTAATTACCAC
CCAGATGAAGAAAAAGATGCTCAAGAAGTCAAAACCATTGTAGAAGATGCTGGACGTAAATGTGTCCTATTACCAGGCGA
TTTACGAAAAGAAGGTTTTGCTAAGGAAGTAGTGAAAAAAGCGTATAACGAACTGGGCGGTTTAGATATTTTAGTGTTAA
ATGCAGGGTTGCAACAATATCAATTAGACATTCAAAAACTTCCAGCTGAACAATTACGCGATACATTTGAAGTGAATGTA
TTCTCAGTTGTTTTTGCAATTCAAGAGGCTTTAAATTACTTAAAAGCGGGAGCAAGTATTATTTTAACTTCTTCCATTCA
AGGAGTTAAGCCAAGTGCACACCTTGTTGATTATGCAATGACAAAAAGTAGTTTAATTTCGCTTACGAAAAGTTTAGCAG
CACAATTAGGTGAAAAAGGTATTCGAATTAATGCTGTGGCGCCAGGACCAATCTGGACAGCTTTACAAATATCTGGGGGA
CAACCACAAGATAGTATTCCAGAATTTGGACAAGATCAACCATTAGGAAGAGCCGGTCAACCAGCAGAACTTGCAAGCAC
ATATGTATTACTGGCATCTGATGAAGCTAGTTATACAACTGGTCAAGTTTATGGAATCACTGGTGGAGCTCCAATTAATT
AA

Upstream 100 bases:

>100_bases
TAGGCGCTAATATCTGGTGGATACTTATATTGGCGATTTTAATTATCTTCGTTGCCTACTTAGTAATGGGTTACGTTGCA
AAAATATAGGAGGAATTATT

Downstream 100 bases:

>100_bases
AAGCGAGGTGATAAGCCATGCCATGGACTAAAGACGATTATCCAAATTCATGGAAAAACCTAAAAAAATCAGAACGCGAA
AAAGCTATTGAGATTGGTAA

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: ORFY [H]

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTNENPLNKYYAGKFEKQRQEYPGLESEMTPVPDTGELSYKGANKLTGKKAFVTGGDSGIGRAAVIAYAREGADVAINYH
PDEEKDAQEVKTIVEDAGRKCVLLPGDLRKEGFAKEVVKKAYNELGGLDILVLNAGLQQYQLDIQKLPAEQLRDTFEVNV
FSVVFAIQEALNYLKAGASIILTSSIQGVKPSAHLVDYAMTKSSLISLTKSLAAQLGEKGIRINAVAPGPIWTALQISGG
QPQDSIPEFGQDQPLGRAGQPAELASTYVLLASDEASYTTGQVYGITGGAPIN

Sequences:

>Translated_293_residues
MTNENPLNKYYAGKFEKQRQEYPGLESEMTPVPDTGELSYKGANKLTGKKAFVTGGDSGIGRAAVIAYAREGADVAINYH
PDEEKDAQEVKTIVEDAGRKCVLLPGDLRKEGFAKEVVKKAYNELGGLDILVLNAGLQQYQLDIQKLPAEQLRDTFEVNV
FSVVFAIQEALNYLKAGASIILTSSIQGVKPSAHLVDYAMTKSSLISLTKSLAAQLGEKGIRINAVAPGPIWTALQISGG
QPQDSIPEFGQDQPLGRAGQPAELASTYVLLASDEASYTTGQVYGITGGAPIN
>Mature_292_residues
TNENPLNKYYAGKFEKQRQEYPGLESEMTPVPDTGELSYKGANKLTGKKAFVTGGDSGIGRAAVIAYAREGADVAINYHP
DEEKDAQEVKTIVEDAGRKCVLLPGDLRKEGFAKEVVKKAYNELGGLDILVLNAGLQQYQLDIQKLPAEQLRDTFEVNVF
SVVFAIQEALNYLKAGASIILTSSIQGVKPSAHLVDYAMTKSSLISLTKSLAAQLGEKGIRINAVAPGPIWTALQISGGQ
PQDSIPEFGQDQPLGRAGQPAELASTYVLLASDEASYTTGQVYGITGGAPIN

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=28.968253968254, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI59889578, Length=194, Percent_Identity=35.0515463917526, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=31.3008130081301, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=29.6, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=31.1787072243346, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=31.3953488372093, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=27.8688524590164, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=34.0314136125654, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI7705925, Length=256, Percent_Identity=31.25, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=30.8080808080808, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=25.1968503937008, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI1789378, Length=286, Percent_Identity=59.4405594405594, Blast_Score=352, Evalue=2e-98,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=34.2857142857143, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=31.5175097276265, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=33.1967213114754, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=33.0612244897959, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=32.7868852459016, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=31.2252964426877, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.5301204819277, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=28.6290322580645, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786812, Length=260, Percent_Identity=28.8461538461538, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=25.9109311740891, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=27.4590163934426, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=33.5849056603774, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=31.203007518797, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=31.5985130111524, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=28.9795918367347, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17560676, Length=262, Percent_Identity=30.1526717557252, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=32.6693227091633, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=30.7086614173228, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=30.3030303030303, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=265, Percent_Identity=29.0566037735849, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=31.5589353612167, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=31.0606060606061, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=27.2357723577236, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=29.2490118577075, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=28.030303030303, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=283, Percent_Identity=32.5088339222615, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.5970149253731, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=29.6992481203008, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=29.5880149812734, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=27.3076923076923, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=26.1904761904762, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=25.7575757575758, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=28.1368821292776, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=28.8888888888889, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=27.710843373494, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=27.6264591439689, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=28.8389513108614, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=29.6442687747036, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=29.5880149812734, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=189, Percent_Identity=30.1587301587302, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=28.2868525896414, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=30.2788844621514, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=30.8943089430894, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI23397609, Length=259, Percent_Identity=29.7297297297297, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=29.5546558704453, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24644337, Length=192, Percent_Identity=34.8958333333333, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=34.1269841269841, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=31.7073170731707, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31353; Mature: 31222

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNENPLNKYYAGKFEKQRQEYPGLESEMTPVPDTGELSYKGANKLTGKKAFVTGGDSGI
CCCCCCCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCC
GRAAVIAYAREGADVAINYHPDEEKDAQEVKTIVEDAGRKCVLLPGDLRKEGFAKEVVKK
CHHEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHH
AYNELGGLDILVLNAGLQQYQLDIQKLPAEQLRDTFEVNVFSVVFAIQEALNYLKAGASI
HHHHHCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
ILTSSIQGVKPSAHLVDYAMTKSSLISLTKSLAAQLGEKGIRINAVAPGPIWTALQISGG
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCC
QPQDSIPEFGQDQPLGRAGQPAELASTYVLLASDEASYTTGQVYGITGGAPIN
CCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure 
TNENPLNKYYAGKFEKQRQEYPGLESEMTPVPDTGELSYKGANKLTGKKAFVTGGDSGI
CCCCCCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCC
GRAAVIAYAREGADVAINYHPDEEKDAQEVKTIVEDAGRKCVLLPGDLRKEGFAKEVVKK
CHHEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHH
AYNELGGLDILVLNAGLQQYQLDIQKLPAEQLRDTFEVNVFSVVFAIQEALNYLKAGASI
HHHHHCCEEEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
ILTSSIQGVKPSAHLVDYAMTKSSLISLTKSLAAQLGEKGIRINAVAPGPIWTALQISGG
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECCC
QPQDSIPEFGQDQPLGRAGQPAELASTYVLLASDEASYTTGQVYGITGGAPIN
CCCCCCCCCCCCCCCCCCCCCHHHHHEEEEEECCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 8196543 [H]